| Literature DB >> 32224869 |
Katherine M Spiech1, Purnima R Tripathy1, Alex M Woodcock1, Nehal A Sheth1, Kimberly S Collins1, Karthik Kannegolla1, Arjun D Sinha1, Asif A Sharfuddin1, Victoria M Pratt2, Myda Khalid3, David S Hains3, Sharon M Moe1, Todd C Skaar1, Ranjani N Moorthi1, Michael T Eadon1.
Abstract
A precision health initiative was implemented across a multi-hospital health system, wherein a panel of genetic variants was tested and utilized in the clinical care of chronic kidney disease (CKD) patients. Pharmacogenomic predictors of antihypertensive response and genomic predictors of CKD were provided to clinicians caring for nephrology patients. To assess clinician knowledge, attitudes, and willingness to act on genetic testing results, a Likert-scale survey was sent to and self-administered by these nephrology providers (N = 76). Most respondents agreed that utilizing pharmacogenomic-guided antihypertensive prescribing is valuable (4.0 ± 0.7 on a scale of 1 to 5, where 5 indicates strong agreement). However, the respondents also expressed reluctance to use genetic testing for CKD risk stratification due to a perceived lack of supporting evidence (3.2 ± 0.9). Exploratory sub-group analyses associated this reluctance with negative responses to both knowledge and attitude discipline questions, thus suggesting reduced exposure to and comfort with genetic information. Given the evolving nature of genomic implementation in clinical care, further education is warranted to help overcome these perception barriers.Entities:
Keywords: APOL1; chronic kidney disease (CKD), hypertension (HTN), genetic testing; pharmacogenomics
Year: 2020 PMID: 32224869 PMCID: PMC7235993 DOI: 10.3390/life10040032
Source DB: PubMed Journal: Life (Basel) ISSN: 2075-1729
Phenotype—Genotype Interactions tested.
| Gene | Variants Tested | Relevant Phenotype |
|---|---|---|
|
| rs1801252, rs1801253 | Beta-Blocker Efficacy |
|
| rs73885319, rs60910145, rs71785313 | Risk of CKD |
|
| rs4244285, rs4986893, rs28399504, rs72552267, rs41291556, rs6413438, rs12248560 | Clopidogrel Efficacy |
|
| rs1799853, rs1057910, rs28371686, rs9332131, rs7900194, rs28371685 | Losartan Efficacy |
|
| rs16947, rs1135840, rs35742686, rs3892097, rs1065852, rs5030655, rs5030867, rs5030865(A), rs5030656, rs1065852, rs1135840, rs5030865(T), rs28371706, rs61736512, rs59421388, rs1135840, rs28371725 | Metoprolol Efficacy |
|
| rs55785340, rs35599367 | Tacrolimus Dosing |
|
| rs776746, rs10264272, rs41303343 | Tacrolimus Dosing |
|
| rs6046 | Amlodipine Efficacy |
|
| rs1458038, rs3184504, rs4551053 | Thiazide Efficacy |
|
| rs2960306, rs1024323 | Beta-Blocker Efficacy |
|
| rs653747 | Risk of CKD |
|
| rs2282538 | Risk of CKD |
|
| rs1801279, rs1801280, rs1799930, rs1799931 | Hydralazine Efficacy |
|
| rs4149601 | Diuretic Efficacy |
|
| rs3814995 | Angiotensin receptor blocker efficacy |
|
| rs489381 | Risk of CKD |
|
| rs4149056, rs4149015 | Simvastatin Dosing |
|
| rs17319721, rs4371638, rs13146355 | Risk of CKD |
|
| rs1800462, rs1800460 and rs1142345, rs1800460, rs1142345, rs1800584 | Azathioprine Dosing |
|
| rs4293393, rs12917707, rs11864909 | Risk of CKD |
|
| rs10995 | Thiazide Efficacy |
|
| rs9923231 | Warfarin Sensitivity |
|
| rs7297610 | Thiazide Efficacy |
CKD: Chronic kidney disease.
Demographics of health care provider survey respondents and recipients.
| Demographic | Respondents (%) |
|---|---|
| Total N | 76 (-) |
|
| |
| Female | 27 (35.5) |
| Male | 47 (61.8) |
| Other or prefer not to answer | 1 (1.3) |
| No response | 1 (1.3) |
|
| |
| Black or African American | 1 (1.3) |
| American Indian or Alaska Native | 1 (1.3) |
| Asian | 23 (30.3) |
| Hispanic or Latino | 1 (1.3) |
| Native Hawaiian or Pacific Islander | 0 (0) |
| White or Caucasian | 42 (55.3) |
| Other or prefer not to answer | 5 (6.6) |
| No response | 3 (3.9) |
|
| |
| Trainee | 37 (48.7) |
| Nephrologist | 39 (51.3) |
| Other | 0 (0) |
|
| |
| County Safety Net Hospital | 9 (11.8) |
| University Hospital | 32 (42.1) |
| Affiliated University Hospital with private practice model | 17 (22.4) |
| Pediatric Hospital | 3 (3.9) |
| Veteran Affairs Hospital | 7 (9.2) |
| Unknown | 8 (10.5) |
Percentages may not total 100% due to rounding. Trainees: fellows and residents; Nephrologists: nephrologists in practice or outside an academic environment, nurse practitioner, physician assistant, or other clinician, academic attending nephrologist (majority of time spent in clinical care), academic attending nephrologist (majority of time spent in research, teaching, or administration); -, not applicable.
Survey question conditions and disciplines.
| Question | Condition | Discipline | Mean (SD) Agreement |
|---|---|---|---|
| 1. A patient’s genetic profile can influence their risk of CKD progression | CKD | Knowledge | 4.2 (0.6) |
| 2. Genetic testing will help me to better diagnose the cause of my patient’s CKD | CKD | Action | 3.6 (0.8) |
| 3. Patients and their families can benefit from understanding genetic contributors to their CKD. | CKD | Attitude | 4.0 (0.6) |
| 4. Genetic testing of my CKD patients provides information that may change my therapeutic management of patients. | CKD | Action | 3.8 (0.8) |
| 5. Genetic testing of my CKD patients provides information that changes dialysis preparation strategies in my patients. | CKD | Action | 3.3 (0.9) |
| 6. Genetic testing for CKD provides information that will help me delay or halt the progression of CKD in my patients. | CKD | Action | 3.5 (0.8) |
| 7. The presence of 2 APOL1 risk alleles in a potential donor would impact the decision to donate a kidney for transplantion. | CKD | Action | 3.8 (0.8) |
| 8. The presence of 2 APOL1 risk alleles in a patient would impact my management of Focal Segmental Glomerulosclerosis (FSGS). | CKD | Action | 3.6 (0.7) |
| 9. I personally review and discuss a family history (taken by myself or a physician-in-training/nurse/physician extender) for every patient I meet in the hospital or in a clinic. | General | Attitude | 4.1 (0.8) |
| 10. Genetic testing is a valuable complement to a detailed family history. | General | Knowledge | 3.7 (0.7) |
| 11. Discussing genetic testing results with patients will lead to increased patient anxiety. | General | Attitude | 3.1 (1.1) |
| 12. Nephrologists should be trained to interpret and counsel patients on genetic variants that contribute to CKD. | CKD | Attitude | 4.1 (0.6) |
| 13. Genetic counselors should be trained to interpret and counsel patients on genetic variants that contribute to CKD. | CKD | Attitude | 4.2 (0.6) |
| 14. There is sufficient evidence to implement genetic testing in patients with CKD. | CKD | Knowledge | 3.2 (0.9) |
| 15. The benefits of genetic testing outweigh the risks to patients. | General | Knowledge | 3.8 (0.7) |
| 16. I feel comfortable discussing genetic test results with patients. | General | Attitude | 3.1 (1.1) |
| 17. A discussion of genetic test results is too time-consuming for a clinic encounter. | General | Attitude | 3.3 (1.0) |
| 18. Genetic testing may help me better treat my patient’s hypertension. | HTN | Knowledge | 3.8 (0.8) |
| 19. A patient’s genetic profile can influence their therapeutic response to antihypertensives. | HTN | Knowledge | 4.0 (0.7) |
| 20. Genetic testing of my HTN patients provides information that may change the antihypertensives that I prescribe. | HTN | Action | 3.8 (0.9) |
| 21. Genetic testing of my HTN patients provides information that may help me better achieve the recommended blood pressure goals. | HTN | Action | 3.7 (0.8) |
| 22. Provided no contraindications exist, I would follow the dosing suggestions of a pharmacogenomic test for a NEW prescription if the test indicated an alternate medication or dose was appropriate. | HTN | Action | 4.0 (0.7) |
| 23. Provided no contraindications exist, I would change an EXISTING prescription, one in which the patient had a stable response, in order to follow the dosing suggestions of a pharmacogenomic test if the test indicated an alternate medication or dose was appropriate. | HTN | Action | 3.4 (0.9) |
The averages and standard deviations were found within the context of one nonresponse for both questions 4 and 5. CKD: Chronic Kidney Disease; HTN: Hypertension.
Figure 1(A–C) Survey respondents who felt the benefits of genetic testing outweigh the risks (Q15) also agreed that (A) genetic testing of CKD patients provides information that may change therapeutic management (Q4, p = 0.013), (B) the presence of two APOL1 risk alleles in a patient would impact management of Focal Segmental Glomerulosclerosis (FSGS) (Q8, p = 0.0057), and (C) they would follow the dosing suggestions of a pharmacogenomic test for new prescriptions (Q22, p = 0.0018). (D–F) The majority of survey respondents who agreed they feel comfortable discussing genetic results with patients (Q16) also agreed that (D) genetic testing of CKD patients may affect therapeutic management (Q4, p = 0.0031), (E) genetic testing complements a detailed family history (Q10, p = 0.0010), and (F) a patient’s genetic profile can influence their therapeutic response to antihypertensives (Q19, p = 0.0038). Response colors are strongly agree (white), agree (light gray), neutral (medium gray), disagree (dark gray), and strongly disagree (black).
Figure 2(A–C) Survey respondents who disagreed that genetic testing affects dialysis preparation (Q5) mostly agreed that (A) patients and their families can benefit from understanding the genetic contributors of CKD (Q3, p = 0.0473), (B) genetic testing may help them treat their patient’s hypertension more effectively (Q18, p = 0.0060), and (C) a genetic profile can influence antihypertensive therapeutic response (Q19, p = 0.0041). (D–F) Nearly all of the survey respondents who agreed that the presence of two APOL1 risk alleles in a potential donor impacts the decision for kidney transplant (Q7) also concurred that (D) a patients genetic profile can influence their risk of CKD progression (Q1, p = 0.0020), (E) they review and discuss family histories with every patient they meet in the hospital or clinic (Q9, p = 0.0011), and (F) nephrologists should be trained to interpret and counsel patients on genetic variants that contribute to CKD (Q12, p = 0.0149). (G–I) Survey respondents who disagreed that there is sufficient evidence to implement genetic testing in patients with CKD (Q14) were split approximately halfway on whether they agreed or disagreed that (G) genetic testing of CKD patients may affect therapeutic management (Q4, p = 0.0050), (H) genetic testing for CKD provides information that will help delay or halt CKD progression (Q6, p = 0.0138), and (I) the presence of two APOL1 risk alleles would impact FSGS management (Q8, p = 0.0052). Response colors are strongly agree (white), agree (light gray), neutral (medium gray), disagree (dark gray), and strongly disagree (black).
Figure 3(A–C) Survey respondents who agreed that genetic testing of HTN patients provides information that may change which antihypertensives are prescribed (Q20) were more likely to agree that (A) genetic testing will help diagnose the cause of a patient’s CKD more effectively (Q2, p = 0.00004), and (B) nephrologists should be trained in genetic testing interpretation and patient counseling (Q12, p = 0.0040). However, those who agreed with question 20 were split halfway on whether they agreed or disagreed that (C) they feel comfortable discussing genetic test results with patients (Q16, p = 0.0194). Response colors are strongly agree (white), agree (light gray), neutral (medium gray), disagree (dark gray), and strongly disagree (black).