Literature DB >> 32222318

Critical Assessment of Targeted Protein Degradation as a Research Tool and Pharmacological Modality.

Milka Kostic1, Lyn H Jones2.   

Abstract

Small molecules continue to dominate drug discovery because of their ease of use, lower cost of manufacturing, and access to intracellular targets. However, despite these advantages, small molecules are more likely to fail in clinical trials compared with biologicals and their development remains limited to a small subset of disease-relevant 'druggable' targets. Targeted protein degradation has recently emerged as a novel pharmacological modality that promises to overcome small molecule limitations whilst retaining their key advantages. Here, we use a Strengths-Weaknesses-Opportunities-Threats (SWOT) framework to critically assess the current status of this rapidly evolving field. We expect that degrader molecules are only the beginning of a range of novel targeting modalities that hijack existing endogenous cellular machineries to chemically redirect biological targets and pathways. Therefore, this piece may offer a roadmap for enhancing development of both degraders and related modalities.
Copyright © 2020 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  degrader molecules; small molecule drug discovery; targeted protein degradation; undruggable targets

Year:  2020        PMID: 32222318      PMCID: PMC7202367          DOI: 10.1016/j.tips.2020.02.006

Source DB:  PubMed          Journal:  Trends Pharmacol Sci        ISSN: 0165-6147            Impact factor:   14.819


  67 in total

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Authors:  Adrian Fegan; Brian White; Jonathan C T Carlson; Carston R Wagner
Journal:  Chem Rev       Date:  2010-06-09       Impact factor: 60.622

2.  PROTAC-induced BET protein degradation as a therapy for castration-resistant prostate cancer.

Authors:  Kanak Raina; Jing Lu; Yimin Qian; Martha Altieri; Deborah Gordon; Ann Marie K Rossi; Jing Wang; Xin Chen; Hanqing Dong; Kam Siu; James D Winkler; Andrew P Crew; Craig M Crews; Kevin G Coleman
Journal:  Proc Natl Acad Sci U S A       Date:  2016-06-06       Impact factor: 11.205

Review 3.  Perilous journey: a tour of the ubiquitin-proteasome system.

Authors:  Gary Kleiger; Thibault Mayor
Journal:  Trends Cell Biol       Date:  2014-01-20       Impact factor: 20.808

Review 4.  Proteolysis targeting chimeras (PROTACs) in 'beyond rule-of-five' chemical space: Recent progress and future challenges.

Authors:  Scott D Edmondson; Bin Yang; Charlene Fallan
Journal:  Bioorg Med Chem Lett       Date:  2019-04-20       Impact factor: 2.823

Review 5.  Progress with covalent small-molecule kinase inhibitors.

Authors:  Zheng Zhao; Philip E Bourne
Journal:  Drug Discov Today       Date:  2018-01-11       Impact factor: 7.851

6.  Targeted protein degradation: expanding the toolbox.

Authors:  Matthieu Schapira; Matthew F Calabrese; Alex N Bullock; Craig M Crews
Journal:  Nat Rev Drug Discov       Date:  2019-10-30       Impact factor: 84.694

7.  Expanding the Degradable Proteome: Designing PROTACs by the Book.

Authors:  Martin G Jaeger; Georg E Winter
Journal:  Cell Chem Biol       Date:  2020-01-16       Impact factor: 8.116

Review 8.  Recent Advances in Selective and Irreversible Covalent Ligand Development and Validation.

Authors:  Tinghu Zhang; John M Hatcher; Mingxing Teng; Nathanael S Gray; Milka Kostic
Journal:  Cell Chem Biol       Date:  2019-10-17       Impact factor: 8.116

9.  Ceapins block the unfolded protein response sensor ATF6α by inducing a neomorphic inter-organelle tether.

Authors:  Ciara M Gallagher; Lars Plate; Sandra Elizabeth Torres; Meghna Gupta; Christina R Liem; Xiaoyan Guo; Ruilin Tian; Robert M Stroud; Martin Kampmann; Jonathan S Weissman; Peter Walter
Journal:  Elife       Date:  2019-05-31       Impact factor: 8.140

Review 10.  The Pharmaceutical Industry in 2018. An Analysis of FDA Drug Approvals from the Perspective of Molecules.

Authors:  Beatriz G de la Torre; Fernando Albericio
Journal:  Molecules       Date:  2019-02-23       Impact factor: 4.411

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  9 in total

1.  Phenyl-Glutarimides: Alternative Cereblon Binders for the Design of PROTACs.

Authors:  Jaeki Min; Anand Mayasundari; Fatemeh Keramatnia; Barbara Jonchere; Seung Wook Yang; Jamie Jarusiewicz; Marisa Actis; Sourav Das; Brandon Young; Jake Slavish; Lei Yang; Yong Li; Xiang Fu; Shalandus H Garrett; Mi-Kyung Yun; Zhenmei Li; Stanley Nithianantham; Sergio Chai; Taosheng Chen; Anang Shelat; Richard E Lee; Gisele Nishiguchi; Stephen W White; Martine F Roussel; Patrick Ryan Potts; Marcus Fischer; Zoran Rankovic
Journal:  Angew Chem Int Ed Engl       Date:  2021-11-16       Impact factor: 15.336

2.  Exploring Ligand-Directed N-Acyl-N-alkylsulfonamide-Based Acylation Chemistry for Potential Targeted Degrader Development.

Authors:  Mingxing Teng; Jie Jiang; Scott B Ficarro; Hyuk-Soo Seo; Jae Hyun Bae; Katherine A Donovan; Eric S Fischer; Tinghu Zhang; Sirano Dhe-Paganon; Jarrod A Marto; Nathanael S Gray
Journal:  ACS Med Chem Lett       Date:  2021-07-21       Impact factor: 4.632

Review 3.  Novel Design Strategies to Enhance the Efficiency of Proteolysis Targeting Chimeras.

Authors:  Chunlong Zhao; Frank J Dekker
Journal:  ACS Pharmacol Transl Sci       Date:  2022-08-22

4.  Development of CDK2 and CDK5 Dual Degrader TMX-2172.

Authors:  Mingxing Teng; Jie Jiang; Zhixiang He; Nicholas P Kwiatkowski; Katherine A Donovan; Caitlin E Mills; Chiara Victor; John M Hatcher; Eric S Fischer; Peter K Sorger; Tinghu Zhang; Nathanael S Gray
Journal:  Angew Chem Int Ed Engl       Date:  2020-06-03       Impact factor: 15.336

5.  DCAF11 Supports Targeted Protein Degradation by Electrophilic Proteolysis-Targeting Chimeras.

Authors:  Xiaoyu Zhang; Lena M Luukkonen; Christie L Eissler; Vincent M Crowley; Yu Yamashita; Michael A Schafroth; Shota Kikuchi; David S Weinstein; Kent T Symons; Brian E Nordin; Joe L Rodriguez; Thomas G Wucherpfennig; Ludwig G Bauer; Melissa M Dix; Dean Stamos; Todd M Kinsella; Gabriel M Simon; Kristen A Baltgalvis; Benjamin F Cravatt
Journal:  J Am Chem Soc       Date:  2021-03-30       Impact factor: 15.419

Review 6.  PROTACs: An Emerging Therapeutic Modality in Precision Medicine.

Authors:  Dhanusha A Nalawansha; Craig M Crews
Journal:  Cell Chem Biol       Date:  2020-08-13       Impact factor: 9.039

Review 7.  Targeting smooth muscle cell phenotypic switching in vascular disease.

Authors:  Raja Chakraborty; Payel Chatterjee; Jui M Dave; Allison C Ostriker; Daniel M Greif; Eva M Rzucidlo; Kathleen A Martin
Journal:  JVS Vasc Sci       Date:  2021-05-15

Review 8.  Targeted Protein Degradation as a Promising Tool for Epigenetic Upregulation of Fetal Hemoglobin.

Authors:  Thijs C J Verheul; Van Tuan Trinh; Olalla Vázquez; Sjaak Philipsen
Journal:  ChemMedChem       Date:  2020-11-04       Impact factor: 3.466

Review 9.  Unifying Catalysis Framework to Dissect Proteasomal Degradation Paradigms.

Authors:  Frances P Rodriguez-Rivera; Samuel M Levi
Journal:  ACS Cent Sci       Date:  2021-06-16       Impact factor: 14.553

  9 in total

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