Literature DB >> 24457024

Perilous journey: a tour of the ubiquitin-proteasome system.

Gary Kleiger1, Thibault Mayor2.   

Abstract

Eukaryotic cells are equipped to degrade proteins via the ubiquitin-proteasome system (UPS). Proteins become degraded upon their conjugation to chains of ubiquitin where they are then directed to the 26S proteasome, a macromolecular protease. The transfer of ubiquitin to proteins and their subsequent degradation are highly complex processes, and new research is beginning to uncover the molecular details of how ubiquitination and degradation take place in the cell. We review some of the new data providing insights into how these processes occur. Although distinct mechanisms are often observed, some common themes are emerging for how the UPS guides protein substrates through their final journey.
Copyright © 2013 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  E1-activating; E2-conjugating; E3-ligase; proteolysis; ubiquitin proteasome system

Mesh:

Substances:

Year:  2014        PMID: 24457024      PMCID: PMC4037451          DOI: 10.1016/j.tcb.2013.12.003

Source DB:  PubMed          Journal:  Trends Cell Biol        ISSN: 0962-8924            Impact factor:   20.808


  88 in total

1.  E1-E2 interactions in ubiquitin and Nedd8 ligation pathways.

Authors:  Zeynep Tokgöz; Thomas J Siepmann; Frederick Streich; Brajesh Kumar; Jennifer M Klein; Arthur L Haas
Journal:  J Biol Chem       Date:  2011-11-08       Impact factor: 5.157

Review 2.  Growing sphere of influence: Cdc48/p97 orchestrates ubiquitin-dependent extraction from chromatin.

Authors:  Nico P Dantuma; Thorsten Hoppe
Journal:  Trends Cell Biol       Date:  2012-07-19       Impact factor: 20.808

3.  Structure of a ubiquitin E1-E2 complex: insights to E1-E2 thioester transfer.

Authors:  Shaun K Olsen; Christopher D Lima
Journal:  Mol Cell       Date:  2013-02-14       Impact factor: 17.970

Review 4.  The ubiquitin code.

Authors:  David Komander; Michael Rape
Journal:  Annu Rev Biochem       Date:  2012-04-10       Impact factor: 23.643

5.  SGTA recognizes a noncanonical ubiquitin-like domain in the Bag6-Ubl4A-Trc35 complex to promote endoplasmic reticulum-associated degradation.

Authors:  Yue Xu; Mengli Cai; Yingying Yang; Lan Huang; Yihong Ye
Journal:  Cell Rep       Date:  2012-12-13       Impact factor: 9.423

6.  A conserved asparagine has a structural role in ubiquitin-conjugating enzymes.

Authors:  Christopher E Berndsen; Reuven Wiener; Ian W Yu; Alison E Ringel; Cynthia Wolberger
Journal:  Nat Chem Biol       Date:  2013-01-06       Impact factor: 15.040

7.  Complete subunit architecture of the proteasome regulatory particle.

Authors:  Gabriel C Lander; Eric Estrin; Mary E Matyskiela; Charlene Bashore; Eva Nogales; Andreas Martin
Journal:  Nature       Date:  2012-01-11       Impact factor: 49.962

8.  Why do cellular proteins linked to K63-polyubiquitin chains not associate with proteasomes?

Authors:  James A Nathan; Hyoung Tae Kim; Lily Ting; Steven P Gygi; Alfred L Goldberg
Journal:  EMBO J       Date:  2013-01-11       Impact factor: 11.598

9.  Cdc48/p97 promotes degradation of aberrant nascent polypeptides bound to the ribosome.

Authors:  Rati Verma; Robert S Oania; Natalie J Kolawa; Raymond J Deshaies
Journal:  Elife       Date:  2013-01-22       Impact factor: 8.140

10.  Structure of a RING E3 ligase and ubiquitin-loaded E2 primed for catalysis.

Authors:  Anna Plechanovová; Ellis G Jaffray; Michael H Tatham; James H Naismith; Ronald T Hay
Journal:  Nature       Date:  2012-09-06       Impact factor: 49.962

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  113 in total

1.  Development of a novel cell-based assay to monitor the transactivation activity of the HSV-1 protein ICP0.

Authors:  Angela M Fowler; Heather E Shinogle; David J Davido
Journal:  Antiviral Res       Date:  2015-04-30       Impact factor: 5.970

2.  Decoys Untangle Complicated Redundancy and Reveal Targets of Circadian Clock F-Box Proteins.

Authors:  Chin-Mei Lee; Ann Feke; Man-Wah Li; Christopher Adamchek; Kristofor Webb; José Pruneda-Paz; Eric J Bennett; Steve A Kay; Joshua M Gendron
Journal:  Plant Physiol       Date:  2018-05-23       Impact factor: 8.340

3.  The initiator caspase Dronc is subject of enhanced autophagy upon proteasome impairment in Drosophila.

Authors:  T V Lee; H E Kamber Kaya; R Simin; E H Baehrecke; A Bergmann
Journal:  Cell Death Differ       Date:  2016-04-22       Impact factor: 15.828

4.  Self-regulating ubiquitin ligases.

Authors:  Spencer Hill; Gary Kleiger
Journal:  EMBO J       Date:  2017-01-13       Impact factor: 11.598

Review 5.  How Do J-Proteins Get Hsp70 to Do So Many Different Things?

Authors:  Elizabeth A Craig; Jaroslaw Marszalek
Journal:  Trends Biochem Sci       Date:  2017-03-15       Impact factor: 13.807

Review 6.  Regulation of Normal and Malignant Hematopoiesis by FBOX Ubiquitin E3 Ligases.

Authors:  R Willow Hynes-Smith; Karli J Wittorf; Shannon M Buckley
Journal:  Trends Immunol       Date:  2020-11-04       Impact factor: 16.687

Review 7.  Quality Control in Neurons: Mitophagy and Other Selective Autophagy Mechanisms.

Authors:  Chantell S Evans; Erika L F Holzbaur
Journal:  J Mol Biol       Date:  2019-07-08       Impact factor: 5.469

8.  The Stability and Expression Level of Bok Are Governed by Binding to Inositol 1,4,5-Trisphosphate Receptors.

Authors:  Jacqualyn J Schulman; Forrest A Wright; Xiaobing Han; Eric J Zluhan; Laura M Szczesniak; Richard J H Wojcikiewicz
Journal:  J Biol Chem       Date:  2016-04-06       Impact factor: 5.157

9.  The San1 Ubiquitin Ligase Functions Preferentially with Ubiquitin-conjugating Enzyme Ubc1 during Protein Quality Control.

Authors:  Rebeca Ibarra; Daniella Sandoval; Eric K Fredrickson; Richard G Gardner; Gary Kleiger
Journal:  J Biol Chem       Date:  2016-07-12       Impact factor: 5.157

10.  Ushering in the cardiac role of Ubiquilin1.

Authors:  Xi Fang; Christa Trexler; Ju Chen
Journal:  J Clin Invest       Date:  2018-10-22       Impact factor: 14.808

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