Literature DB >> 32208766

Transcription in Living Cells: Molecular Mechanisms of Bursting.

Joseph Rodriguez1, Daniel R Larson2.   

Abstract

Transcription in several organisms from certain bacteria to humans has been observed to be stochastic in nature: toggling between active and inactive states. Periods of active nascent RNA synthesis known as bursts represent individual gene activation events in which multiple polymerases are initiated. Therefore, bursting is the single locus illustration of both gene activation and repression. Although transcriptional bursting was originally observed decades ago, only recently have technological advances enabled the field to begin elucidating gene regulation at the single-locus level. In this review, we focus on how biochemical, genomic, and single-cell data describe the regulatory steps of transcriptional bursts.

Entities:  

Keywords:  bursting; gene regulation; single-cell; single-molecule; transcription

Mesh:

Substances:

Year:  2020        PMID: 32208766     DOI: 10.1146/annurev-biochem-011520-105250

Source DB:  PubMed          Journal:  Annu Rev Biochem        ISSN: 0066-4154            Impact factor:   23.643


  29 in total

Review 1.  In search of lost time: Enhancers as modulators of timing in lymphocyte development and differentiation.

Authors:  Jonathan M Chu; Nicholas A Pease; Hao Yuan Kueh
Journal:  Immunol Rev       Date:  2021-03-18       Impact factor: 12.988

2.  MYC amplifies gene expression through global changes in transcription factor dynamics.

Authors:  Simona Patange; David A Ball; Yihan Wan; Tatiana S Karpova; Michelle Girvan; David Levens; Daniel R Larson
Journal:  Cell Rep       Date:  2022-01-25       Impact factor: 9.423

Review 3.  The Mediator kinase module: an interface between cell signaling and transcription.

Authors:  Olivia Luyties; Dylan J Taatjes
Journal:  Trends Biochem Sci       Date:  2022-02-19       Impact factor: 13.807

4.  MYC assembles and stimulates topoisomerases 1 and 2 in a "topoisome".

Authors:  Subhendu K Das; Vladislav Kuzin; Donald P Cameron; Suzanne Sanford; Rajiv Kumar Jha; Zuqin Nie; Marta Trullols Rosello; Ronald Holewinski; Thorkell Andresson; Jan Wisniewski; Toyoaki Natsume; David H Price; Brian A Lewis; Fedor Kouzine; David Levens; Laura Baranello
Journal:  Mol Cell       Date:  2021-12-09       Impact factor: 17.970

Review 5.  The Self-Organizing Genome: Principles of Genome Architecture and Function.

Authors:  Tom Misteli
Journal:  Cell       Date:  2020-09-24       Impact factor: 41.582

6.  RNA-Mediated Feedback Control of Transcriptional Condensates.

Authors:  Jonathan E Henninger; Ozgur Oksuz; Krishna Shrinivas; Ido Sagi; Gary LeRoy; Ming M Zheng; J Owen Andrews; Alicia V Zamudio; Charalampos Lazaris; Nancy M Hannett; Tong Ihn Lee; Phillip A Sharp; Ibrahim I Cissé; Arup K Chakraborty; Richard A Young
Journal:  Cell       Date:  2020-12-16       Impact factor: 41.582

Review 7.  Merging Established Mechanisms with New Insights: Condensates, Hubs, and the Regulation of RNA Polymerase II Transcription.

Authors:  Megan Palacio; Dylan J Taatjes
Journal:  J Mol Biol       Date:  2021-08-30       Impact factor: 5.469

Review 8.  Towards a 'Spot On' Understanding of Transcription in the Nucleus.

Authors:  Simona Patange; David A Ball; Tatiana S Karpova; Daniel R Larson
Journal:  J Mol Biol       Date:  2021-05-02       Impact factor: 6.151

9.  Altering transcription factor binding reveals comprehensive transcriptional kinetics of a basic gene.

Authors:  Achim P Popp; Johannes Hettich; J Christof M Gebhardt
Journal:  Nucleic Acids Res       Date:  2021-06-21       Impact factor: 16.971

10.  Capicua is a fast-acting transcriptional brake.

Authors:  Aleena L Patel; Lili Zhang; Shannon E Keenan; Christine A Rushlow; Cécile Fradin; Stanislav Y Shvartsman
Journal:  Curr Biol       Date:  2021-06-23       Impact factor: 10.900

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