Literature DB >> 35081348

MYC amplifies gene expression through global changes in transcription factor dynamics.

Simona Patange1, David A Ball2, Yihan Wan2, Tatiana S Karpova2, Michelle Girvan3, David Levens4, Daniel R Larson5.   

Abstract

The MYC oncogene has been studied for decades, yet there is still intense debate over how this transcription factor controls gene expression. Here, we seek to answer these questions with an in vivo readout of discrete events of gene expression in single cells. We engineered an optogenetic variant of MYC (Pi-MYC) and combined this tool with single-molecule RNA and protein imaging techniques to investigate the role of MYC in modulating transcriptional bursting and transcription factor binding dynamics in human cells. We find that the immediate consequence of MYC overexpression is an increase in the duration rather than in the frequency of bursts, a functional role that is different from the majority of human transcription factors. We further propose that the mechanism by which MYC exerts global effects on the active period of genes is by altering the binding dynamics of transcription factors involved in RNA polymerase II complex assembly and productive elongation.
Copyright © 2022. Published by Elsevier Inc.

Entities:  

Keywords:  MYC; single-molecule imaging; transcription

Mesh:

Substances:

Year:  2022        PMID: 35081348      PMCID: PMC8849550          DOI: 10.1016/j.celrep.2021.110292

Source DB:  PubMed          Journal:  Cell Rep            Impact factor:   9.423


  66 in total

1.  Highly inclined thin illumination enables clear single-molecule imaging in cells.

Authors:  Makio Tokunaga; Naoko Imamoto; Kumiko Sakata-Sogawa
Journal:  Nat Methods       Date:  2008-01-06       Impact factor: 28.547

2.  Live-cell imaging reveals the interplay between transcription factors, nucleosomes, and bursting.

Authors:  Benjamin T Donovan; Anh Huynh; David A Ball; Heta P Patel; Michael G Poirier; Daniel R Larson; Matthew L Ferguson; Tineke L Lenstra
Journal:  EMBO J       Date:  2019-05-17       Impact factor: 11.598

3.  c-Myc is a universal amplifier of expressed genes in lymphocytes and embryonic stem cells.

Authors:  Zuqin Nie; Gangqing Hu; Gang Wei; Kairong Cui; Arito Yamane; Wolfgang Resch; Ruoning Wang; Douglas R Green; Lino Tessarollo; Rafael Casellas; Keji Zhao; David Levens
Journal:  Cell       Date:  2012-09-28       Impact factor: 41.582

4.  SpotLearn: Convolutional Neural Network for Detection of Fluorescence In Situ Hybridization (FISH) Signals in High-Throughput Imaging Approaches.

Authors:  Prabhakar R Gudla; Koh Nakayama; Gianluca Pegoraro; Tom Misteli
Journal:  Cold Spring Harb Symp Quant Biol       Date:  2017-11-28

5.  Light therapy by blue LED improves wound healing in an excision model in rats.

Authors:  Natalia Adamskaya; Peter Dungel; Rainer Mittermayr; Joachim Hartinger; Georg Feichtinger; Klemens Wassermann; Heinz Redl; Martijn van Griensven
Journal:  Injury       Date:  2011-09       Impact factor: 2.586

6.  Enhancer Regulation of Transcriptional Bursting Parameters Revealed by Forced Chromatin Looping.

Authors:  Caroline R Bartman; Sarah C Hsu; Chris C-S Hsiung; Arjun Raj; Gerd A Blobel
Journal:  Mol Cell       Date:  2016-04-07       Impact factor: 17.970

7.  STAGA recruits Mediator to the MYC oncoprotein to stimulate transcription and cell proliferation.

Authors:  Xiaohui Liu; Marina Vorontchikhina; Yuan-Liang Wang; Francesco Faiola; Ernest Martinez
Journal:  Mol Cell Biol       Date:  2007-10-29       Impact factor: 4.272

8.  Selective transcriptional regulation by Myc in cellular growth control and lymphomagenesis.

Authors:  Arianna Sabò; Theresia R Kress; Mattia Pelizzola; Stefano de Pretis; Marcin M Gorski; Alessandra Tesi; Marco J Morelli; Pranami Bora; Mirko Doni; Alessandro Verrecchia; Claudia Tonelli; Giovanni Fagà; Valerio Bianchi; Alberto Ronchi; Diana Low; Heiko Müller; Ernesto Guccione; Stefano Campaner; Bruno Amati
Journal:  Nature       Date:  2014-07-09       Impact factor: 49.962

9.  Super-resolution imaging of fluorescently labeled, endogenous RNA Polymerase II in living cells with CRISPR/Cas9-mediated gene editing.

Authors:  Won-Ki Cho; Namrata Jayanth; Susan Mullen; Tzer Han Tan; Yoon J Jung; Ibrahim I Cissé
Journal:  Sci Rep       Date:  2016-10-26       Impact factor: 4.379

10.  Thiol-linked alkylation of RNA to assess expression dynamics.

Authors:  Veronika A Herzog; Brian Reichholf; Tobias Neumann; Philipp Rescheneder; Pooja Bhat; Thomas R Burkard; Wiebke Wlotzka; Arndt von Haeseler; Johannes Zuber; Stefan L Ameres
Journal:  Nat Methods       Date:  2017-09-25       Impact factor: 28.547

View more
  1 in total

1.  Bioinformatics-Based Approach for Exploring the Immune Cell Infiltration Patterns in Alzheimer's Disease and Determining the Intervention Mechanism of Liuwei Dihuang Pill.

Authors:  Chenling Zhao; Zhangsheng Jiang; Liwei Tian; Lulu Tang; An Zhou; Ting Dong
Journal:  Dose Response       Date:  2022-07-21       Impact factor: 2.623

  1 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.