Literature DB >> 32187530

Soft Power of Nonconsensus Protein-DNA Binding.

Vladimir B Teif1.   

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Year:  2020        PMID： 32187530      PMCID： PMC7175416          DOI： 10.1016/j.bpj.2020.02.026

Source DB:  PubMed          Journal:  Biophys J        ISSN： 0006-3495            Impact factor:   4.033


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  10 in total

1.  Protein-DNA binding in the absence of specific base-pair recognition.

Authors:  Ariel Afek; Joshua L Schipper; John Horton; Raluca Gordân; David B Lukatsky
Journal:  Proc Natl Acad Sci U S A       Date:  2014-10-13       Impact factor: 11.205

2.  Quantitative modeling of transcription factor binding specificities using DNA shape.

Authors:  Tianyin Zhou; Ning Shen; Lin Yang; Namiko Abe; John Horton; Richard S Mann; Harmen J Bussemaker; Raluca Gordân; Remo Rohs
Journal:  Proc Natl Acad Sci U S A       Date:  2015-03-09       Impact factor: 11.205

Review 3.  Taking into account nucleosomes for predicting gene expression.

Authors:  Vladimir B Teif; Fabian Erdel; Daria A Beshnova; Yevhen Vainshtein; Jan-Philipp Mallm; Karsten Rippe
Journal:  Methods       Date:  2013-03-21       Impact factor: 3.608

4.  Non-specific DNA binding of genome regulating proteins as a biological control mechanism: I. The lac operon: equilibrium aspects.

Authors:  P H von Hippel; A Revzin; C A Gross; A C Wang
Journal:  Proc Natl Acad Sci U S A       Date:  1974-12       Impact factor: 11.205

5.  Transcription Factor Binding in Embryonic Stem Cells Is Constrained by DNA Sequence Repeat Symmetry.

Authors:  Matan Goldshtein; Meir Mellul; Gai Deutch; Masahiko Imashimizu; Koh Takeuchi; Eran Meshorer; Oren Ram; David B Lukatsky
Journal:  Biophys J       Date:  2020-02-15       Impact factor: 4.033

6.  The pitch of chromatin DNA is reflected in its nucleotide sequence.

Authors:  E N Trifonov; J L Sussman
Journal:  Proc Natl Acad Sci U S A       Date:  1980-07       Impact factor: 11.205

7.  Specific binding of the lambda phage repressor to lambda DNA.

Authors:  M Ptashne
Journal:  Nature       Date:  1967-04-15       Impact factor: 49.962

Review 8.  Transcription factor-DNA binding: beyond binding site motifs.

Authors:  Sachi Inukai; Kian Hong Kock; Martha L Bulyk
Journal:  Curr Opin Genet Dev       Date:  2017-03-27       Impact factor: 5.578

9.  A De Novo Shape Motif Discovery Algorithm Reveals Preferences of Transcription Factors for DNA Shape Beyond Sequence Motifs.

Authors:  Md Abul Hassan Samee; Benoit G Bruneau; Katherine S Pollard
Journal:  Cell Syst       Date:  2019-01-16       Impact factor: 10.304

10.  Deciphering eukaryotic gene-regulatory logic with 100 million random promoters.

Authors:  Carl G de Boer; Eeshit Dhaval Vaishnav; Ronen Sadeh; Esteban Luis Abeyta; Nir Friedman; Aviv Regev
Journal:  Nat Biotechnol       Date:  2019-12-02       Impact factor: 68.164
  10 in total

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