| Literature DB >> 32155946 |
Miroslav Havránek1, Maksim A Samsonov2, Josef Holub3, Zdeňka Růžičková2, Ladislav Drož1, Aleš Růžička2, Jindřich Fanfrlík4, Drahomír Hnyk3.
Abstract
Although 1-Ph-2-X-closo-1,2-C2B10H10 (X = F, Cl, Br, I) derivatives had been computed to have positive values of the heat of formation, it was possible to prepare them. The corresponding solid-state structures were computationally analyzed. Electrostatic potential computations indicated the presence of highly positive σ-holes in the case of heavy halogens. Surprisingly, the halogen•••π interaction formed by the Br atom was found to be more favorable than that of I.Entities:
Keywords: halogen bond; icosahedral boron cluster; sigma hole
Mesh:
Substances:
Year: 2020 PMID: 32155946 PMCID: PMC7179469 DOI: 10.3390/molecules25051200
Source DB: PubMed Journal: Molecules ISSN: 1420-3049 Impact factor: 4.411
11B chemical shifts (in ppm) for 1–4 with respect to BF3.OEt2. 11B NMR spectra were recorded on a Varian Unity—500 instrument in CDCl3 solution. Computed shifts taken from ref. [3] are shown in parentheses. The calculations were performed at the GIAO-B3LYP/II//MP2/6-31G* level (DZP + ECP were used for 3–4).
| Compound | B9 | B12 | B4, B5 | B7, B11 | B3, B6 | B8, B10 |
|---|---|---|---|---|---|---|
|
| −6.6 | −11.2 | −12.6 | −13.6 | −14.6 | −14.6 |
|
| −4.6 | −6.4 | −10.2 | −10.2 | −10.7 | −11.8 |
|
| −4.2 | −5.3 | −9.2 | −10.8 | −10.8 | −10.8 |
|
| −3.2 | −3.7 | −7.8 | −9.4 | −9.4 | −10.2 |
Figure 1The molecular structures of complexes 1–4. Thermal ellipsoids are at the 40% probability level.
Figure 2A fragment of crystal packing in 1–4. Thermal ellipsoids are at the 40% probability level.
The computed heats of formation (ΔHf298) in kcal mol−1.
| Compound | ΔHf298 |
|---|---|
| 12-vertex series | |
| 1-Ph-2-F- | 2.7 |
| 1-Ph-2-Cl- | 45.7 |
| 1-Ph-2-Br- | 57.0 |
| 1-Ph-2-I- | 64.9 |
| 10-vertex series | |
| 1-Ph-2-F- | 30.9 |
| 1-Ph-2-Cl- | 73.2 |
| 1-Ph-2-Br- | 84.6 |
| 1-Ph-2-I- | 92.6 |
Figure 3The computed electrostatic potential (ESP) molecular surfaces of the 1, 2, 3, and 4 compounds. The ESP has been computed at the HF/def2TZVP level. The ESP color range is in kcal mol−1
Two-body and many-body interaction energies (ΔE2 and ΔEMB) computed at the DFT-D3/TPSS/TZVPP level in kcal mol−1.
| Compound | ΣΔE2 | ΔEMB | ΣΔE2 | Total |
|---|---|---|---|---|
| 1-Ph-2-F- | −50.74 | 5.04 | −2.69 | −48.39 |
| 1-Ph-2-Cl- | −52.29 | 5.51 | −4.60 | −51.38 |
| 1-Ph-2-Br- | −53.72 | 4.05 | −3.58 | −53.25 |
| 1-Ph-2-I- | −56.31 | 3.45 | −2.37 | −55.23 |
Figure 4The most stable interaction motifs from the studied crystals of the 1–4 compounds. The positions of H atoms have been optimized at the DFT-D3/BLYP/DZVP level.
Interaction energies computed at the DFT-D3/TPSS/TZVPP level. The interaction energies have been decomposed into electrostatic (Eelec), induction (Eind), dispersion (Edisp), and exchange (Eexch) contributions using the SAPT0/jun-cc-pVDZ methodology. All energies are in kcal mol−1. The relative values in parentheses show the contribution to the sum of all the attractive energy terms of SAPT.
| Motif | DFT-D3 | SAPT0 | ||||
|---|---|---|---|---|---|---|
| Total | Eelec | Eind | Edisp | Eexch | ||
| 1-Ph-2-F- | ||||||
| A•••B | −6.93 | −7.20 | −1.92 | −0.57 | −9.65 | 4.94 |
| A•••C | −6.58 | −7.15 | −2.56 | −0.68 | −9.87 | 5.96 |
| 1-Ph-2-Cl- | ||||||
| A•••B | −7.10 | −7.82 | −3.44 | −0.91 | −11.63 | 8.15 |
| A•••C | −5.43 | −4.64 | −1.68 | −1.03 | −7.87 | 5.95 |
| 1-Ph-2-Br- | ||||||
| A•••B1 | −6.91 | −7.10 | −4.80 | −1.27 | −11.30 | 10.23 |
| A•••C2 | −5.67 | −5.27 | −2.19 | −0.73 | −6.75 | 4.40 |
| 1-Ph-2-I- | ||||||
| A•••B | −5.98 | − | − | − | − | − |
| A•••C | −5.79 | − | − | − | − | − |
1 The analogous motif of the crystal structure by A. Welch et al. [13] was computed to have the interaction energy of −6.73 kcal mol−1 at the MP2/CBS level [12]. 2 The analogous motif of the crystal structure by Welch [13] was computed to have the interaction energy of −5.09 kcal mol−1 at the MP2/CBS level [12].
Figure 5A general scheme of the fragment used in the analysis of the CCDC and some examples of the structural motifs found. The A, B, C are the fragment used.
The data obtained in the analysis of the fragment in the CCDC.
| X | Restraints, Å | Number of Structures | Angles (B-Hal-C) α1, α2,° | d1, d2, Å | c, Å |
|---|---|---|---|---|---|
| F | 2.8 < (d1, d2) < 3.1 | 4 | 99.08–168.80 | 2.871–3.090 | 3.235–4.013 |
| Cl | 3.1 < (d1, d2) < 3.5 | 19 | 96.77–169.76 | 3.156–3.497 | 3.172–4.287 |
| Br | 3.1 < (d1, d2) < 3.6 | 10 | 104.44–171.01 | 3.329–3.586 | 3.567–4.476 |
| I | 3.1 < (d1, d2) < 3.8 | 4 | 140.21–176.25 | 3.437–3.795 | 3.416–4.078 |
The refinement information and crystallographic data for 1–4.
| Compound | 1 | 2 | 3 | 4 |
|---|---|---|---|---|
| Chemical formula | C8H15B10F | C8H15B10Cl | C8H15B10Br | C8H15B10I |
| Formula weight | 238.30 | 254.75 | 299.21 | 346.20 |
| Temperature/K | 150(2) | 150(2) | 150(2) | 150(2) |
| Crystal system | Monoclinic | Monoclinic | Orthorhombic | Monoclinic |
| Space group |
| |||
| a/Å | 8.6564(9) | 7.2920(4) | 10.257(3) | 12.0950(8) |
| b/Å | 7.5229(7) | 23.9912(14) | 11.448(3) | 7.2033(5) |
| c/Å | 10.5576(11) | 7.7979(5) | 24.132(7) | 16.9983(14) |
| α/° | 90 | 90 | 90 | 90 |
| β/° | 106.168(3) | 93.397(2) | 90 | 90.453(3) |
| γ/° | 90 | 90 | 90 | 90 |
| Volume/Å | 660.33(12) | 1361.80(14) | 2833.8(14) | 1480.91(19) |
| Z | 2 | 4 | 8 | 4 |
| ρcalc g/cm3 | 1.199 | 1.243 | 1.403 | 1.553 |
| μ/mm−1 | 0.066 | 0.248 | 2.870 | 2.133 |
| F(000) | 244 | 520 | 1184 | 664 |
| Crystal size/mm3 | 0.989 × 0.504 × 0.386 | 0.414 × 0.225 × 0.148 | 0.342 × 0.192 × 0.150 | 0.753 × 0.416 × 0.343 |
| Radiation type | MoKα | MoKα | MoKα | MoKα |
| 2θ range for data collection/° | 2.450 to 27.996 | 2.751 to 26.415 | 2.606 to 24.999 | 2.396 to 28.276 |
| Index ranges | −11 < = h < =11, | −9 < = h < = 9, | −12 < = h < = 12, | −14 < = h < = 16, |
| Reflections collected | 14986 | 33108 | 14758 | 21597 |
| Independent reflections | 1704 [R(int) = 0.0745] | 2794 [R(int) = 0.0694] | 2439 [R(int) = 0.1169] | 6917 [R(int) = 0.0499] |
| Data/restraints/parameters | 1704/12/115 | 2794/0/172 | 2439/264/172 | 6917/1/344 |
| Goodness-of-fit on F2 | 1.049 | 1.067 | 1.176 | 1.053 |
| Final R indexes [I > 2σ(I)] | ||||
| Largest diff. peak/hole/e Å-3 | 0.673 and −0.393 | 0.282 and −0.307 | 1.683 and −1.521 | 1.635 and −1.431 |