| Literature DB >> 32142223 |
Joana Ropio1,2,3,4, Alain Chebly1,5, Jacky Ferrer1, Martina Prochazkova-Carlotti1, Yamina Idrissi1, Lamia Azzi-Martin6, David Cappellen1,7, Anne Pham-Ledard1,8, Paula Soares3,4,9, Jean-Philippe Merlio1,7, Edith Chevret1.
Abstract
BACKGROUND: Telomere shortening is linked to a range of different human diseases, hence reliable measurement methods are needed to uncover such associations. Among the plethora of telomere length measurement methods, qPCR is reported as easy to conduct and a cost-effective approach to study samples with low DNA amounts.Entities:
Keywords: cancer; qPCR; southern blot; telomere length; tumor
Mesh:
Year: 2020 PMID: 32142223 PMCID: PMC7196062 DOI: 10.1002/cam4.2816
Source DB: PubMed Journal: Cancer Med ISSN: 2045-7634 Impact factor: 4.452
CTCL cells’ absolute telomere length estimated by absolute qPCR
| Diploid telomere length (kb) | Ploidy | Corrected telomere length (kb) | |
|---|---|---|---|
| Cell lines | |||
| Mac1 | 1.075 ± 0.035 | Near‐diploid | 1.075 ± 0.035 |
| Mac2A | 4.452 ± 0.147 | Near‐diploid | 4.452 ± 0.147 |
| Mac2B | 2.811 ± 0.093 | Near‐diploid | 2.873 ± 0.095 |
| MyLa | 12.592 ± 0.416 | Near‐diploid | 12.471 ± 0.412 |
| HuT78 | 1.858 ± 0.061 | Hypertriploid | 1.279 ± 0.042 |
| Mean | 4.320 ± 0.143 | ||
| Sz patients | |||
| 1 | 2.819 ± 0.093 | Near‐diploid | 2.819 ± 0.093 |
| 2 | 3.656 ± 0.121 | Near‐diploid | 3.656 ± 0.121 |
| 3 | 5.559 ± 0.183 | Near‐diploid | 5.559 ± 0.183 |
| 4 | 5.392 ± 0.178 | Near‐diploid | 5.392 ± 0.178 |
| 5 | 2.930 ± 0.097 | Near‐diploid | 2.930 ± 0.097 |
| 6 | 4.623 ± 0.153 | Near‐diploid | 4.623 ± 0.153 |
| 7 | 2.077 ± 0.069 | Near‐diploid | 2.077 ± 0.069 |
| 8 | 8.226 ± 0.272 | Near‐diploid | 7.883 ± 0.260 |
| 9 | 3.387 ± 0.112 | Near‐diploid | 3.462 ± 0.114 |
| 10 | 3.804 ± 0.126 | Triploid | 2.536 ± 0.084 |
| Mean | 4.094 ± 0.135 | ||
Figure 1CTCL cells’ telomere length assessment. (A) Relative telomere length measurement by a standard relative qPCR assay. (B) Cytogenetic analysis of CTCL cells (a) Conventional karyotype of a near‐diploid cell and (b) mFISH of a hypertriploid karyotype (C) Absolute telomere length measurement (a) by qPCR and by TRF. The mean cell lines’ telomere length estimated by qPCR (4.320 ± 0.143 kb) was similar to that estimated by TRF (5.652 kb), P = .5040. (b) TRF blot. Arbitrary units (AU); Cutaneous T‐cell lymphoma (CTCL); Deoxyribonucleic acid (DNA); Kilobases (kb); Nonstatistically significant (n.s.) Quantitative real‐time polymerase chain reaction (qPCR); Sézary (Sz); Terminal restriction fragment (TRF)
Figure 2CTCL cells’ telomere length assays correlation. Telomere length results estimated by TRF correlated with results from relative qPCR (A) and with results from absolute qPCR (B). Telomere length estimation by qPCR‐based assays correlated with each other (C). Arbitrary units (AU); Correlation coefficient (R2); Cutaneous T‐cell lymphoma (CTCL); Kilobases (kb); Quantitative real‐time polymerase chain reaction (qPCR); Terminal restriction fragment (TRF)
Figure 3Influence of DNA quality on telomere length measurement. (A) Sézary (Sz) patients’ (a) relative qPCR telomere length measurement and (b) patient samples marked in colored triangles DNA quality analysis by agarose gel electrophoresis. (B) Two cell lines (one with short telomeres and another with long telomeres) (a) DNA heat degradation confirmed by agarose gel electrophoresis and (b) their relative qPCR telomere length measurement. Telomere length of both cell lines significantly increased following DNA degradation (P = .0001 for short telomere cell line and P = .0037 for long telomere cell line). Arbitrary units (AU); Sézary (Sz); **P < .01; ***P < .001
Ct values for KLK3 and Telomeres of two cell lines following heat degradation
| Cell lines | Ct (KLK3) | Ct average | Ct (Telomeres) | Ct average | 2(‐ΔCt) | |
|---|---|---|---|---|---|---|
| Short telomere | not heated | 24.00 | 23.95 | 24.05 | 24.09 | 0.90 |
| 23.89 | 24.13 | |||||
| heated | 26.87 | 26.83 | 23.38 | 23.40 | 10.82 | |
| 26.79 | 23.41 | |||||
| Long telomere | not heated | 22.07 | 22.14 | 16.18 | 16.09 | 66.16 |
| 22.20 | 16 | |||||
| heated | 24.06 | 24.17 | 15.33 | 15.26 | 483.36 | |
| 24.28 | 15.18 |
Figure 4Influence of samples’ tumor cell percentage on telomere length in comparison with healthy donors. (A.) Telomere length of Sz patients’ samples not sorted were significantly shorter when compared with that of healthy lymphocytes (P = .0238). (B.) Telomere length of Sz patients’ samples with more than 50% of tumor cells have significantly shorter telomeres that those of healthy lymphocytes (P = .0374). (C.) Telomere lengths of Sz patients’ samples with less than 50% of tumor cells were not statistically different from those of lymphocytes from healthy donors (P = .1719). Kilobases (kb); Nonstatistically significant (n.s.); Sézary (Sz); *P < .05