Literature DB >> 33471860

Method comparison studies of telomere length measurement using qPCR approaches: A critical appraisal of the literature.

Alyssa R Lindrose1, Lauren W Y McLester-Davis2, Renee I Tristano3, Leila Kataria4, Shahinaz M Gadalla5, Dan T A Eisenberg6, Simon Verhulst7, Stacy Drury1,2,8.   

Abstract

Use of telomere length (TL) as a biomarker for various environmental exposures and diseases has increased in recent years. Various methods have been developed to measure telomere length. Polymerase chain reaction (PCR)-based methods remain wide-spread for population-based studies due to the high-throughput capability. While several studies have evaluated the repeatability and reproducibility of different TL measurement methods, the results have been variable. We conducted a literature review of TL measurement cross-method comparison studies that included a PCR-based method published between January 1, 2002 and May 25, 2020. A total of 25 articles were found that matched the inclusion criteria. Papers were reviewed for quality of methodologic reporting of sample and DNA quality, PCR assay characteristics, sample blinding, and analytic approaches to determine final TL. Overall, methodologic reporting was low as assessed by two different reporting guidelines for qPCR-based TL measurement. There was a wide range in the reported correlation between methods (as assessed by Pearson's r) and few studies utilized the recommended intra-class correlation coefficient (ICC) for assessment of assay repeatability and methodologic comparisons. The sample size for nearly all studies was less than 100, raising concerns about statistical power. Overall, this review found that the current literature on the relation between TL measurement methods is lacking in validity and scientific rigor. In light of these findings, we present reporting guidelines for PCR-based TL measurement methods and results of analyses of the effect of assay repeatability (ICC) on statistical power of cross-sectional and longitudinal studies. Additional cross-laboratory studies with rigorous methodologic and statistical reporting, adequate sample size, and blinding are essential to accurately determine assay repeatability and replicability as well as the relation between TL measurement methods.

Entities:  

Year:  2021        PMID: 33471860      PMCID: PMC7817045          DOI: 10.1371/journal.pone.0245582

Source DB:  PubMed          Journal:  PLoS One        ISSN: 1932-6203            Impact factor:   3.240


  87 in total

1.  Extensive allelic variation and ultrashort telomeres in senescent human cells.

Authors:  Duncan M Baird; Jan Rowson; David Wynford-Thomas; David Kipling
Journal:  Nat Genet       Date:  2003-01-21       Impact factor: 38.330

2.  Telomere analysis by fluorescence in situ hybridization and flow cytometry.

Authors:  M Hultdin; E Grönlund; K Norrback; E Eriksson-Lindström; T Just; G Roos
Journal:  Nucleic Acids Res       Date:  1998-08-15       Impact factor: 16.971

3.  Measurement of telomeric DNA content in human tissues.

Authors:  J E Bryant; K G Hutchings; R K Moyzis; J K Griffith
Journal:  Biotechniques       Date:  1997-09       Impact factor: 1.993

4.  Optimization of a Relative Telomere Length Assay by Monochromatic Multiplex Real-Time Quantitative PCR on the LightCycler 480: Sources of Variability and Quality Control Considerations.

Authors:  Anthony Y Y Hsieh; Sara Saberi; Abhinav Ajaykumar; Kyle Hukezalie; Izabella Gadawski; Beheroze Sattha; Hélène C F Côté
Journal:  J Mol Diagn       Date:  2016-03-08       Impact factor: 5.568

Review 5.  Telomere length measurement-caveats and a critical assessment of the available technologies and tools.

Authors:  Geraldine Aubert; Mark Hills; Peter M Lansdorp
Journal:  Mutat Res       Date:  2011-06-12       Impact factor: 2.433

6.  Influences on the reduction of relative telomere length over 10 years in the population-based Bruneck Study: introduction of a well-controlled high-throughput assay.

Authors:  Silvia Ehrlenbach; Peter Willeit; Stefan Kiechl; Johann Willeit; Markus Reindl; Kathrin Schanda; Florian Kronenberg; Anita Brandstätter
Journal:  Int J Epidemiol       Date:  2009-08-07       Impact factor: 7.196

7.  Human telomeres contain at least three types of G-rich repeat distributed non-randomly.

Authors:  R C Allshire; M Dempster; N D Hastie
Journal:  Nucleic Acids Res       Date:  1989-06-26       Impact factor: 16.971

8.  Reproducibility of telomere length assessment: an international collaborative study.

Authors:  Carmen M Martin-Ruiz; Duncan Baird; Laureline Roger; Petra Boukamp; Damir Krunic; Richard Cawthon; Martin M Dokter; Pim van der Harst; Sofie Bekaert; Tim de Meyer; Goran Roos; Ulrika Svenson; Veryan Codd; Nilesh J Samani; Liane McGlynn; Paul G Shiels; Karen A Pooley; Alison M Dunning; Rachel Cooper; Andrew Wong; Andrew Kingston; Thomas von Zglinicki
Journal:  Int J Epidemiol       Date:  2014-09-19       Impact factor: 7.196

9.  Consequences of measurement error in qPCR telomere data: A simulation study.

Authors:  Daniel Nettle; Luise Seeker; Dan Nussey; Hannah Froy; Melissa Bateson
Journal:  PLoS One       Date:  2019-05-01       Impact factor: 3.240

10.  Blood and dried blood spot telomere length measurement by qPCR: assay considerations.

Authors:  DeAnna L Zanet; Sara Saberi; Laura Oliveira; Beheroze Sattha; Izabella Gadawski; Hélène C F Côté
Journal:  PLoS One       Date:  2013-02-25       Impact factor: 3.240

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  12 in total

1.  Telogator: a method for reporting chromosome-specific telomere lengths from long reads.

Authors:  Zachary Stephens; Alejandro Ferrer; Lisa Boardman; Ravishankar K Iyer; Jean-Pierre Kocher
Journal:  Bioinformatics       Date:  2022-01-12       Impact factor: 6.937

2.  Longitudinal telomere length profile does not reflect HIV and childhood trauma impacts on cognitive function in South African women.

Authors:  Jacqueline Samantha Womersley; Georgina Spies; Gerard Tromp; Soraya Seedat; Sian Megan Joanna Hemmings
Journal:  J Neurovirol       Date:  2021-08-26       Impact factor: 3.739

3.  Feasibility of whole genome and transcriptome profiling in pediatric and young adult cancers.

Authors:  N Shukla; M F Levine; G Gundem; D Domenico; B Spitzer; N Bouvier; J E Arango-Ossa; D Glodzik; J S Medina-Martínez; U Bhanot; J Gutiérrez-Abril; Y Zhou; E Fiala; E Stockfisch; S Li; M I Rodriguez-Sanchez; T O'Donohue; C Cobbs; M H A Roehrl; J Benhamida; F Iglesias Cardenas; M Ortiz; M Kinnaman; S Roberts; M Ladanyi; S Modak; S Farouk-Sait; E Slotkin; M A Karajannis; F Dela Cruz; J Glade Bender; A Zehir; A Viale; M F Walsh; A L Kung; E Papaemmanuil
Journal:  Nat Commun       Date:  2022-05-18       Impact factor: 17.694

4.  Demographic and developmental patterns in telomere length across adolescence.

Authors:  Lauren Gaydosh; Colter Mitchell; Daniel Notterman; Lisa Schneper; Jeanne Brooks-Gunn; Brandon Wagner; Kalsea Koss; Sara McLanahan
Journal:  Biodemography Soc Biol       Date:  2021-10-01

5.  Shortened Infant Telomere Length Is Associated with Attention Deficit/Hyperactivity Disorder Symptoms in Children at Age Two Years: A Birth Cohort Study.

Authors:  Cindy Pham; Regan Vryer; Martin O'Hely; Toby Mansell; David Burgner; Fiona Collier; Christos Symeonides; Mimi L K Tang; Peter Vuillermin; Lawrence Gray; Richard Saffery; Anne-Louise Ponsonby
Journal:  Int J Mol Sci       Date:  2022-04-21       Impact factor: 6.208

6.  DNA-methylation-based telomere length estimator: comparisons with measurements from flow FISH and qPCR.

Authors:  Emily E Pearce; Steve Horvath; Shilpa Katta; Casey Dagnall; Geraldine Aubert; Belynda D Hicks; Stephen R Spellman; Hormuzd Katki; Sharon A Savage; Rotana Alsaggaf; Shahinaz M Gadalla
Journal:  Aging (Albany NY)       Date:  2021-06-03       Impact factor: 5.682

7.  Impact of prenatal tobacco smoking on infant telomere length trajectory and ADHD symptoms at 18 months: a longitudinal cohort study.

Authors:  Meghan P Howell; Christopher W Jones; Cade A Herman; Celia V Mayne; Camilo Fernandez; Katherine P Theall; Kyle C Esteves; Stacy S Drury
Journal:  BMC Med       Date:  2022-04-28       Impact factor: 11.150

8.  Impact of Amplification Efficiency Approaches on Telomere Length Measurement via Quantitative-Polymerase Chain Reaction.

Authors:  Waylon J Hastings; Dan T A Eisenberg; Idan Shalev
Journal:  Front Genet       Date:  2021-09-17       Impact factor: 4.599

Review 9.  Stress and telomere shortening: Insights from cellular mechanisms.

Authors:  Jue Lin; Elissa Epel
Journal:  Ageing Res Rev       Date:  2021-11-01       Impact factor: 10.895

10.  Telomere length predicts timing and intensity of migratory behaviour in a nomadic songbird.

Authors:  Ben J Vernasco; Heather E Watts
Journal:  Biol Lett       Date:  2022-08-03       Impact factor: 3.812

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