Literature DB >> 32129761

NeuroQuery, comprehensive meta-analysis of human brain mapping.

Jérôme Dockès1, Russell A Poldrack2, Romain Primet3, Hande Gözükan3, Tal Yarkoni4, Fabian Suchanek5, Bertrand Thirion1, Gaël Varoquaux1,6.   

Abstract

Reaching a global view of brain organization requires assembling evidence on widely different mental processes and mechanisms. The variety of human neuroscience concepts and terminology poses a fundamental challenge to relating brain imaging results across the scientific literature. Existing meta-analysis methods perform statistical tests on sets of publications associated with a particular concept. Thus, large-scale meta-analyses only tackle single terms that occur frequently. We propose a new paradigm, focusing on prediction rather than inference. Our multivariate model predicts the spatial distribution of neurological observations, given text describing an experiment, cognitive process, or disease. This approach handles text of arbitrary length and terms that are too rare for standard meta-analysis. We capture the relationships and neural correlates of 7547 neuroscience terms across 13 459 neuroimaging publications. The resulting meta-analytic tool, neuroquery.org, can ground hypothesis generation and data-analysis priors on a comprehensive view of published findings on the brain.
© 2020, Dockès et al.

Entities:  

Keywords:  brain imaging; cognitive ontologies; human; meta analysis; neuroscience; predictive models

Mesh:

Substances:

Year:  2020        PMID: 32129761      PMCID: PMC7164961          DOI: 10.7554/eLife.53385

Source DB:  PubMed          Journal:  Elife        ISSN: 2050-084X            Impact factor:   8.140


  35 in total

1.  Medical Subject Headings (MeSH).

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Journal:  Bull Med Libr Assoc       Date:  2000-07

2.  Meta-analysis of the functional neuroanatomy of single-word reading: method and validation.

Authors:  Peter E Turkeltaub; Guinevere F Eden; Karen M Jones; Thomas A Zeffiro
Journal:  Neuroimage       Date:  2002-07       Impact factor: 6.556

3.  Mining for associations between text and brain activation in a functional neuroimaging database.

Authors:  Finn Arup Nielsen; Lars Kai Hansen; Daniela Balslev
Journal:  Neuroinformatics       Date:  2004

4.  Syntactic and semantic modulation of neural activity during auditory sentence comprehension.

Authors:  Colin Humphries; Jeffrey R Binder; David A Medler; Einat Liebenthal
Journal:  J Cogn Neurosci       Date:  2006-04       Impact factor: 3.225

5.  Identifying functional co-activation patterns in neuroimaging studies via poisson graphical models.

Authors:  Wenqiong Xue; Jian Kang; F DuBois Bowman; Tor D Wager; Jian Guo
Journal:  Biometrics       Date:  2014-08-21       Impact factor: 2.571

6.  NeuroNames Brain Hierarchy.

Authors:  D M Bowden; R F Martin
Journal:  Neuroimage       Date:  1995-03       Impact factor: 6.556

Review 7.  Cognitive neuroscience 2.0: building a cumulative science of human brain function.

Authors:  Tal Yarkoni; Russell A Poldrack; David C Van Essen; Tor D Wager
Journal:  Trends Cogn Sci       Date:  2010-09-29       Impact factor: 20.229

8.  Deriving statistical significance maps for SVM based image classification and group comparisons.

Authors:  Bilwaj Gaonkar; Christos Davatzikos
Journal:  Med Image Comput Comput Assist Interv       Date:  2012

9.  Functional Specialization and Flexibility in Human Association Cortex.

Authors:  B T Thomas Yeo; Fenna M Krienen; Simon B Eickhoff; Siti N Yaakub; Peter T Fox; Randy L Buckner; Christopher L Asplund; Michael W L Chee
Journal:  Cereb Cortex       Date:  2014-09-23       Impact factor: 5.357

10.  Large-scale automated synthesis of human functional neuroimaging data.

Authors:  Tal Yarkoni; Russell A Poldrack; Thomas E Nichols; David C Van Essen; Tor D Wager
Journal:  Nat Methods       Date:  2011-06-26       Impact factor: 28.547

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  20 in total

1.  Mapping gene transcription and neurocognition across human neocortex.

Authors:  Justine Y Hansen; Ross D Markello; Jacob W Vogel; Jakob Seidlitz; Danilo Bzdok; Bratislav Misic
Journal:  Nat Hum Behav       Date:  2021-03-25

2.  The neural correlates of grandmaternal caregiving.

Authors:  James K Rilling; Amber Gonzalez; Minwoo Lee
Journal:  Proc Biol Sci       Date:  2021-11-17       Impact factor: 5.349

Review 3.  Neural substrates of substance use disorders.

Authors:  Martin P Paulus
Journal:  Curr Opin Neurol       Date:  2022-07-05       Impact factor: 6.283

Review 4.  Multiregion neuronal activity: the forest and the trees.

Authors:  Timothy A Machado; Isaac V Kauvar; Karl Deisseroth
Journal:  Nat Rev Neurosci       Date:  2022-10-03       Impact factor: 38.755

5.  Lesion network mapping of ectopic craniopharyngioma identifies potential cause of psychosis: a case report.

Authors:  Aaron Loh; Jürgen Germann; Shakeel Qazi; Rabab Husain; Alexandre Boutet; Andres M Lozano; Alireza Mansouri
Journal:  Acta Neurochir (Wien)       Date:  2022-09-16       Impact factor: 2.816

6.  Evidence accumulation, not 'self-control', explains dorsolateral prefrontal activation during normative choice.

Authors:  Cendri A Hutcherson; Anita Tusche
Journal:  Elife       Date:  2022-09-08       Impact factor: 8.713

7.  Type 2 diabetes mellitus accelerates brain aging and cognitive decline: Complementary findings from UK Biobank and meta-analyses.

Authors:  Botond Antal; Liam P McMahon; Syed Fahad Sultan; Andrew Lithen; Deborah J Wexler; Bradford Dickerson; Eva-Maria Ratai; Lilianne R Mujica-Parodi
Journal:  Elife       Date:  2022-05-24       Impact factor: 8.713

8.  Modular community structure of the face network supports face recognition.

Authors:  Gidon Levakov; Olaf Sporns; Galia Avidan
Journal:  Cereb Cortex       Date:  2022-09-04       Impact factor: 4.861

9.  Delineating visual, auditory and motor regions in the human brain with functional neuroimaging: a BrainMap-based meta-analytic synthesis.

Authors:  Marisa K Heckner; Edna C Cieslik; Vincent Küppers; Peter T Fox; Simon B Eickhoff; Robert Langner
Journal:  Sci Rep       Date:  2021-05-11       Impact factor: 4.379

10.  Comment on Raine (2019) 'The neuromoral theory of antisocial, violent, and psychopathic behavior'.

Authors:  Hyemin Han
Journal:  F1000Res       Date:  2020-04-20
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