Literature DB >> 32103850

Reprogramming cooperative monotone dynamical systems.

Rushina Shah1, Domitilla Del Vecchio1.   

Abstract

Multistable dynamical systems are ubiquitous in nature, especially in the context of regulatory networks controlling cell fate decisions, wherein stable steady states correspond to different cell phenotypes. In the past decade, it has become experimentally possible to "reprogram" the fate of a cell by suitable externally imposed input stimulations. In several of these reprogramming instances, the underlying regulatory network has a known structure and often it falls in the class of cooperative monotone dynamical systems. In this paper, we therefore leverage this structure to provide concrete guidance on the choice of inputs that reprogram a cooperative dynamical system to a desired target steady state. Our results are parameter-independent and therefore can serve as a practical guidance to cell-fate reprogramming experiments.

Entities:  

Year:  2019        PMID: 32103850      PMCID: PMC7043062          DOI: 10.1109/cdc.2018.8618649

Source DB:  PubMed          Journal:  Proc IEEE Conf Decis Control        ISSN: 0743-1546


  19 in total

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2.  Core transcriptional regulatory circuitry in human embryonic stem cells.

Authors:  Laurie A Boyer; Tong Ihn Lee; Megan F Cole; Sarah E Johnstone; Stuart S Levine; Jacob P Zucker; Matthew G Guenther; Roshan M Kumar; Heather L Murray; Richard G Jenner; David K Gifford; Douglas A Melton; Rudolf Jaenisch; Richard A Young
Journal:  Cell       Date:  2005-09-23       Impact factor: 41.582

3.  PU.1 induces myeloid lineage commitment in multipotent hematopoietic progenitors.

Authors:  C Nerlov; T Graf
Journal:  Genes Dev       Date:  1998-08-01       Impact factor: 11.361

4.  Mathematical modelling of stem cell differentiation: the PU.1-GATA-1 interaction.

Authors:  Campbell Duff; Kate Smith-Miles; Leo Lopes; Tianhai Tian
Journal:  J Math Biol       Date:  2011-04-02       Impact factor: 2.259

Review 5.  A dynamical-systems view of stem cell biology.

Authors:  Chikara Furusawa; Kunihiko Kaneko
Journal:  Science       Date:  2012-10-12       Impact factor: 47.728

6.  Induction of pluripotent stem cells from mouse embryonic and adult fibroblast cultures by defined factors.

Authors:  Kazutoshi Takahashi; Shinya Yamanaka
Journal:  Cell       Date:  2006-08-10       Impact factor: 41.582

Review 7.  Mechanisms and models of somatic cell reprogramming.

Authors:  Yosef Buganim; Dina A Faddah; Rudolf Jaenisch
Journal:  Nat Rev Genet       Date:  2013-06       Impact factor: 53.242

8.  Bifurcation dynamics in lineage-commitment in bipotent progenitor cells.

Authors:  Sui Huang; Yan-Ping Guo; Gillian May; Tariq Enver
Journal:  Dev Biol       Date:  2007-03-03       Impact factor: 3.582

9.  Detecting cellular reprogramming determinants by differential stability analysis of gene regulatory networks.

Authors:  Isaac Crespo; Thanneer M Perumal; Wiktor Jurkowski; Antonio del Sol
Journal:  BMC Syst Biol       Date:  2013-12-19

10.  Dissecting engineered cell types and enhancing cell fate conversion via CellNet.

Authors:  Samantha A Morris; Patrick Cahan; Hu Li; Anna M Zhao; Adrianna K San Roman; Ramesh A Shivdasani; James J Collins; George Q Daley
Journal:  Cell       Date:  2014-08-14       Impact factor: 41.582

View more
  1 in total

1.  Reprogramming multistable monotone systems with application to cell fate control.

Authors:  Rushina Shah; Domitilla Del Vecchio
Journal:  IEEE Trans Netw Sci Eng       Date:  2020-07-09
  1 in total

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