Literature DB >> 14766974

Detection of multistability, bifurcations, and hysteresis in a large class of biological positive-feedback systems.

David Angeli1, James E Ferrell, Eduardo D Sontag.   

Abstract

It is becoming increasingly clear that bistability (or, more generally, multistability) is an important recurring theme in cell signaling. Bistability may be of particular relevance to biological systems that switch between discrete states, generate oscillatory responses, or "remember" transitory stimuli. Standard mathematical methods allow the detection of bistability in some very simple feedback systems (systems with one or two proteins or genes that either activate each other or inhibit each other), but realistic depictions of signal transduction networks are invariably much more complex. Here, we show that for a class of feedback systems of arbitrary order the stability properties of the system can be deduced mathematically from how the system behaves when feedback is blocked. Provided that this open-loop, feedback-blocked system is monotone and possesses a sigmoidal characteristic, the system is guaranteed to be bistable for some range of feedback strengths. We present a simple graphical method for deducing the stability behavior and bifurcation diagrams for such systems and illustrate the method with two examples taken from recent experimental studies of bistable systems: a two-variable Cdc2/Wee1 system and a more complicated five-variable mitogen-activated protein kinase cascade.

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Year:  2004        PMID: 14766974      PMCID: PMC357011          DOI: 10.1073/pnas.0308265100

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  38 in total

1.  Distinct, constitutively active MAPK phosphatases function in Xenopus oocytes: implications for p42 MAPK regulation In vivo.

Authors:  M L Sohaskey; J E Ferrell
Journal:  Mol Biol Cell       Date:  1999-11       Impact factor: 4.138

2.  Negative feedback and ultrasensitivity can bring about oscillations in the mitogen-activated protein kinase cascades.

Authors:  B N Kholodenko
Journal:  Eur J Biochem       Date:  2000-03

3.  Mechanistic studies of the dual phosphorylation of mitogen-activated protein kinase.

Authors:  J E Ferrell; R R Bhatt
Journal:  J Biol Chem       Date:  1997-07-25       Impact factor: 5.157

4.  A positive-feedback-based bistable 'memory module' that governs a cell fate decision.

Authors:  Wen Xiong; James E Ferrell
Journal:  Nature       Date:  2003-11-27       Impact factor: 49.962

5.  Bistability in cell signaling: How to make continuous processes discontinuous, and reversible processes irreversible.

Authors:  James E. Ferrell; Wen Xiong
Journal:  Chaos       Date:  2001-03       Impact factor: 3.642

6.  Positive feedback between MAP kinase and Mos during Xenopus oocyte maturation.

Authors:  W T Matten; T D Copeland; N G Ahn; G F Vande Woude
Journal:  Dev Biol       Date:  1996-11-01       Impact factor: 3.582

7.  The activating dual phosphorylation of MAPK by MEK is nonprocessive.

Authors:  W R Burack; T W Sturgill
Journal:  Biochemistry       Date:  1997-05-20       Impact factor: 3.162

8.  Bistability in the JNK cascade.

Authors:  C P Bagowski; J E Ferrell
Journal:  Curr Biol       Date:  2001-08-07       Impact factor: 10.834

9.  Interdependent domains controlling the enzymatic activity of mitogen-activated protein kinase kinase 1.

Authors:  S J Mansour; J M Candia; J E Matsuura; M C Manning; N G Ahn
Journal:  Biochemistry       Date:  1996-12-03       Impact factor: 3.162

10.  Numerical analysis of a comprehensive model of M-phase control in Xenopus oocyte extracts and intact embryos.

Authors:  B Novak; J J Tyson
Journal:  J Cell Sci       Date:  1993-12       Impact factor: 5.285

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  219 in total

1.  Integrating multiple signals into cell decisions by networks of protein modification cycles.

Authors:  Luca Cerone; Javier Muñoz-Garcia; Zoltán Neufeld
Journal:  Biophys J       Date:  2011-10-05       Impact factor: 4.033

2.  Computational modeling of signaling pathways mediating cell cycle checkpoint control and apoptotic responses to ionizing radiation-induced DNA damage.

Authors:  Yuchao Zhao; In Chio Lou; Rory B Conolly
Journal:  Dose Response       Date:  2011-10-25       Impact factor: 2.658

3.  Nonessential sites improve phosphorylation switch.

Authors:  Liming Wang; Qing Nie; German Enciso
Journal:  Biophys J       Date:  2010-09-22       Impact factor: 4.033

4.  Systems biology: The cost of feedback control.

Authors:  Li Sun; Attila Becskei
Journal:  Nature       Date:  2010-09-09       Impact factor: 49.962

Review 5.  Spatial cycles in G-protein crowd control.

Authors:  Nachiket Vartak; Philippe Bastiaens
Journal:  EMBO J       Date:  2010-08-18       Impact factor: 11.598

6.  Feedback regulation through myosin II confers robustness on RhoA signalling at E-cadherin junctions.

Authors:  Rashmi Priya; Guillermo A Gomez; Srikanth Budnar; Suzie Verma; Hayley L Cox; Nicholas A Hamilton; Alpha S Yap
Journal:  Nat Cell Biol       Date:  2015-09-14       Impact factor: 28.824

7.  Complex, non-monotonic dose-response curves with multiple maxima: Do we (ever) sample densely enough?

Authors:  Fatima Cvrčková; Jiří Luštinec; Viktor Žárský
Journal:  Plant Signal Behav       Date:  2015

8.  The limiting dynamics of a bistable molecular switch with and without noise.

Authors:  Michael C Mackey; Marta Tyran-Kamińska
Journal:  J Math Biol       Date:  2015-12-21       Impact factor: 2.259

Review 9.  Computational systems biology of cellular processes in Arabidopsis thaliana: an overview.

Authors:  Pascal Holzheu; Ursula Kummer
Journal:  Cell Mol Life Sci       Date:  2019-11-25       Impact factor: 9.261

10.  Structural properties of the MAPK pathway topologies in PC12 cells.

Authors:  Elisa Franco; Franco Blanchini
Journal:  J Math Biol       Date:  2012-10-25       Impact factor: 2.259

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