Literature DB >> 32042198

Growth of E. coli on formate and methanol via the reductive glycine pathway.

Seohyoung Kim1, Steffen N Lindner1, Selçuk Aslan1, Oren Yishai1, Sebastian Wenk1, Karin Schann1, Arren Bar-Even2.   

Abstract

Engineering a biotechnological microorganism for growth on one-carbon intermediates, produced from the abiotic activation of CO2, is a key synthetic biology step towards the valorization of this greenhouse gas to commodity chemicals. Here we redesign the central carbon metabolism of the model bacterium Escherichia coli for growth on one-carbon compounds using the reductive glycine pathway. Sequential genomic introduction of the four metabolic modules of the synthetic pathway resulted in a strain capable of growth on formate and CO2 with a doubling time of ~70 h and growth yield of ~1.5 g cell dry weight (gCDW) per mol-formate. Short-term evolution decreased doubling time to less than 8 h and improved biomass yield to 2.3 gCDW per mol-formate. Growth on methanol and CO2 was achieved by further expression of a methanol dehydrogenase. Establishing synthetic formatotrophy and methylotrophy, as demonstrated here, paves the way for sustainable bioproduction rooted in CO2 and renewable energy.

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Year:  2020        PMID: 32042198     DOI: 10.1038/s41589-020-0473-5

Source DB:  PubMed          Journal:  Nat Chem Biol        ISSN: 1552-4450            Impact factor:   15.040


  46 in total

Review 1.  Comparing photosynthetic and photovoltaic efficiencies and recognizing the potential for improvement.

Authors:  Robert E Blankenship; David M Tiede; James Barber; Gary W Brudvig; Graham Fleming; Maria Ghirardi; M R Gunner; Wolfgang Junge; David M Kramer; Anastasios Melis; Thomas A Moore; Christopher C Moser; Daniel G Nocera; Arthur J Nozik; Donald R Ort; William W Parson; Roger C Prince; Richard T Sayre
Journal:  Science       Date:  2011-05-13       Impact factor: 47.728

Review 2.  The formate bio-economy.

Authors:  Oren Yishai; Steffen N Lindner; Jorge Gonzalez de la Cruz; Hezi Tenenboim; Arren Bar-Even
Journal:  Curr Opin Chem Biol       Date:  2016-07-25       Impact factor: 8.822

Review 3.  Plasma technology - a novel solution for CO2 conversion?

Authors:  Ramses Snoeckx; Annemie Bogaerts
Journal:  Chem Soc Rev       Date:  2017-10-02       Impact factor: 54.564

Review 4.  Engineering the bioconversion of methane and methanol to fuels and chemicals in native and synthetic methylotrophs.

Authors:  R Kyle Bennett; Lisa M Steinberg; Wilfred Chen; Eleftherios T Papoutsakis
Journal:  Curr Opin Biotechnol       Date:  2017-12-05       Impact factor: 9.740

5.  Metabolic construction strategies for direct methanol utilization in Saccharomyces cerevisiae.

Authors:  Zhongxue Dai; Honglian Gu; Shangjie Zhang; Fengxue Xin; Wenming Zhang; Weiliang Dong; Jiangfeng Ma; Honghua Jia; Min Jiang
Journal:  Bioresour Technol       Date:  2017-05-19       Impact factor: 9.642

6.  Engineering Escherichia coli for methanol conversion.

Authors:  Jonas E N Müller; Fabian Meyer; Boris Litsanov; Patrick Kiefer; Eva Potthoff; Stéphanie Heux; Wim J Quax; Volker F Wendisch; Trygve Brautaset; Jean-Charles Portais; Julia A Vorholt
Journal:  Metab Eng       Date:  2015-01-14       Impact factor: 9.783

Review 7.  Bioenergetic constraints for conversion of syngas to biofuels in acetogenic bacteria.

Authors:  Johannes Bertsch; Volker Müller
Journal:  Biotechnol Biofuels       Date:  2015-12-10       Impact factor: 6.040

8.  Methanol-essential growth of Escherichia coli.

Authors:  Fabian Meyer; Philipp Keller; Johannes Hartl; Olivier G Gröninger; Patrick Kiefer; Julia A Vorholt
Journal:  Nat Commun       Date:  2018-04-17       Impact factor: 14.919

9.  A modified serine cycle in Escherichia coli coverts methanol and CO2 to two-carbon compounds.

Authors:  Hong Yu; James C Liao
Journal:  Nat Commun       Date:  2018-09-28       Impact factor: 14.919

10.  Improving formaldehyde consumption drives methanol assimilation in engineered E. coli.

Authors:  Benjamin M Woolston; Jason R King; Michael Reiter; Bob Van Hove; Gregory Stephanopoulos
Journal:  Nat Commun       Date:  2018-06-19       Impact factor: 14.919

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  34 in total

Review 1.  Metabolic engineering strategies to enable microbial utilization of C1 feedstocks.

Authors:  Wei Jiang; David Hernández Villamor; Huadong Peng; Jian Chen; Long Liu; Victoria Haritos; Rodrigo Ledesma-Amaro
Journal:  Nat Chem Biol       Date:  2021-07-26       Impact factor: 15.040

2.  Dynamic control of the distribution of carbon flux between cell growth and butyrate biosynthesis in Escherichia coli.

Authors:  Liang Guo; Jiaxin Lu; Cong Gao; Linpei Zhang; Liming Liu; Xiulai Chen
Journal:  Appl Microbiol Biotechnol       Date:  2021-06-11       Impact factor: 4.813

3.  Developing Synthetic Methylotrophs by Metabolic Engineering-Guided Adaptive Laboratory Evolution.

Authors:  Yu Wang; Ping Zheng; Jibin Sun
Journal:  Adv Biochem Eng Biotechnol       Date:  2022       Impact factor: 2.635

4.  Biosynthesis Based on One-Carbon Mixotrophy.

Authors:  Yaeseong Hong; An-Ping Zeng
Journal:  Adv Biochem Eng Biotechnol       Date:  2022       Impact factor: 2.635

Review 5.  Understanding and Engineering Glycine Cleavage System and Related Metabolic Pathways for C1-Based Biosynthesis.

Authors:  Jie Ren; Wei Wang; Jinglei Nie; Wenqiao Yuan; An-Ping Zeng
Journal:  Adv Biochem Eng Biotechnol       Date:  2022       Impact factor: 2.635

6.  Engineering the Reductive Glycine Pathway: A Promising Synthetic Metabolism Approach for C1-Assimilation.

Authors:  Nico J Claassens; Ari Satanowski; Viswanada R Bysani; Beau Dronsella; Enrico Orsi; Vittorio Rainaldi; Suzan Yilmaz; Sebastian Wenk; Steffen N Lindner
Journal:  Adv Biochem Eng Biotechnol       Date:  2022       Impact factor: 2.635

7.  Conversion of Carbon Monoxide to Chemicals Using Microbial Consortia.

Authors:  Ivette Parera Olm; Diana Z Sousa
Journal:  Adv Biochem Eng Biotechnol       Date:  2022       Impact factor: 2.635

8.  An orthogonal metabolic framework for one-carbon utilization.

Authors:  Alexander Chou; Seung Hwan Lee; Fayin Zhu; James M Clomburg; Ramon Gonzalez
Journal:  Nat Metab       Date:  2021-10-21

9.  Diverse Energy-Conserving Pathways in Clostridium difficile: Growth in the Absence of Amino Acid Stickland Acceptors and the Role of the Wood-Ljungdahl Pathway.

Authors:  Simonida Gencic; David A Grahame
Journal:  J Bacteriol       Date:  2020-09-23       Impact factor: 3.490

10.  Capture of carbon dioxide and hydrogen by engineered Escherichia coli: hydrogen-dependent CO2 reduction to formate.

Authors:  Felix Leo; Fabian M Schwarz; Kai Schuchmann; Volker Müller
Journal:  Appl Microbiol Biotechnol       Date:  2021-07-31       Impact factor: 4.813

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