| Literature DB >> 32040667 |
Yaseen M Arabi1,2,3, Robert Fowler4,5,6, Frederick G Hayden7.
Abstract
With the expanding use of molecular assays, viral pathogens are increasingly recognized among critically ill adult patients with community-acquired severe respiratory illness; studies have detected respiratory viral infections (RVIs) in 17-53% of such patients. In addition, novel pathogens including zoonotic coronaviruses like the agents causing Severe Acute Respiratory Syndrome (SARS), Middle East Respiratory Syndrome (MERS) and the 2019 novel coronavirus (2019 nCoV) are still being identified. Patients with severe RVIs requiring ICU care present typically with hypoxemic respiratory failure. Oseltamivir is the most widely used neuraminidase inhibitor for treatment of influenza; data suggest that early use is associated with reduced mortality in critically ill patients with influenza. At present, there are no antiviral therapies of proven efficacy for other severe RVIs. Several adjunctive pharmacologic interventions have been studied for their immunomodulatory effects, including macrolides, corticosteroids, cyclooxygenase-2 inhibitors, sirolimus, statins, anti-influenza immune plasma, and vitamin C, but none is recommended at present in severe RVIs. Evidence-based supportive care is the mainstay for management of severe respiratory viral infection. Non-invasive ventilation in patients with severe RVI causing acute hypoxemic respiratory failure and pneumonia is associated with a high likelihood of transition to invasive ventilation. Limited existing knowledge highlights the need for data regarding supportive care and adjunctive pharmacologic therapy that is specific for critically ill patients with severe RVI. There is a need for more pragmatic and efficient designs to test different therapeutics both individually and in combination.Entities:
Keywords: Acute respiratory distress syndrome; Antiviral therapy; Coronavirus; Influenza; Neuraminidase inhibitor
Mesh:
Substances:
Year: 2020 PMID: 32040667 PMCID: PMC7079862 DOI: 10.1007/s00134-020-05943-5
Source DB: PubMed Journal: Intensive Care Med ISSN: 0342-4642 Impact factor: 17.440
Prevalence of community-acquired respiratory viral infections (RVIs) in critically ill patients
| Study | Population | Patients ( | Samples | Country | Assays | Overall prevalence or RVI | Influenza | Picornaviruses (rhinovirus, enterovirus) | Human coronaviruses (229E, NL63, OC43, HKU1) | Respiratory syncytial virus | Human metapneumovirus | Parainfluenza virus | Adenovirus |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Daubin 2006 | IMV for > 48 h | 187 | TA | France | Viral culture, IFA, NAAT | 32 (17%) | Influenza A 7 (4%) | Rhinovirus 19 (10%) Enterovirus 2 (1%) | 1 (0.5%) | 2 (1%) | 0 (0%) | 1 (0.5%) | 1 (0.5%) |
| Cameron 2006 | COPD exacerbation requiring NIV or IMV | 105 | PS | Australia | IFA, viral culture, NAAT, serology | 46 (43%) | Influenza A 14 (13%) Influenza B 6 (6%) | Rhinovirus 7 (7%) Enterovirus 2 (2%) | 3 (3%) | 7 (7%) | 3 (3%) | 11 (10%) | 0 (0%) |
| Schnell 2014 | Acute respiratory failure | 70, 47 (67%) mechanically ventilated | PS, BAL | France | IFA, NAAT | 34 (49%) | Influenza A 11 (16%) Influenza B 2 (3%) | Rhinovirus 6 (9%) | 5 (7%) | 4 (6%) | 4 (6%) | 1 (1%) | 3 (4%) |
| Legoff 2005 | Acute pneumonia admitted to ICU | 41 | BAL | France | Viral culture, IFA, NAAT | 13 (32%) | Influenza A 7 (17%) Influenza B 1 (2%) | 0 (0%) | 0 (0%) | 2 (5%) | 0 (0%) | 2 (5%) | 2 (5%) |
| Wiemken 2013 | Severe CAP admitted to ICU | 468, 84% adults | PS | USA | NAAT | 106 (23%) | Influenza 38 (8%) | Rhinovirus 40 (9%) | 0 (0%0 | 8 (2%) | 15 (3%) | 4 (1%) | 1 (0.2%) |
| Karhu 2014 | Severe CAP | 49 | PS, BAL, TA | Finland | NAAT | 24 (49%) | 1 (2%) | Rhinovirus 15 (30%) Enterovirus 2 (4%) | 2 (4%) | 1 (2%) | 0 (0%) | 1 (2%) | 4 (8%) |
| Tramuto 2016 | ILI admitted to ICU | 233 | PS, BAL | Italy | NAAT | 102 (44%) | 57 (24%) | Rhinovirus 7 (3%) Enterovirus 14 (6%) | 11 (5%) | 8 (3%) | 16 (7%) | 16 (7%) | 0 (0%) |
| Choi 2019a | Severe CAP admitted to ICU | 1559 | PS, BAL | Republic of Korea | NAAT | Not reported | 109 (7.0%) | Rhinovirus 120 (8%) | 56 (4%) | 52 (3%) | 50 (3%) | 71 (5%) | Not reported |
| Shorr 2018 | Severe CAP and HCAP requiring IMV | 364 | sputum, TA, BAL | USA | NAAT | 65 (18%) | Influenza A 12 (3%) Influenza B 1 (0.3%) | Rhinovirus/Enterovirus 20 (5%) | Not reported | 11 (3%) | 8 (2%) | 7 (2%) | 6 (2%) |
| Legoff 2018 | Hematology patients admitted to ICU | 747 | PS | France | NAAT | 163 (22%) | 20 (3%) | 92 (12%) | 22 (3%) | 18 (2%) | 4 (0.5%), | 12 (2%) | 5 (0.6%) |
| Voiriot 2016 | Severe CAP admitted to ICU | 174 | PS, TA, BAL | France | NAAT | 93 (53%) | Influenza A 32 (18%) Influenza B 6 (3%) | Rhinovirus/Enterovirus 22 (13%) | 14 (8%) | 9 (5%) | 12 (7%) | 3 (2%) | 3 (2%) |
| Arabi 2018 | Severe acute respiratory infection admitted to ICU | 222 | PS, TA, BAL | Saudi Arabia | NAAT | 43 (19%) | Influenza A 29 (13%) Influenza B 3 (1%) | Rhinovirus 9 (4%) Enterovirus 0 (0%) | 5 (2%) | 1 (0.5%) | 1 (0.5%) | 1 (0.5%) | 1 (0.5%) |
Overall prevalence is reported here for influenza, picornaviruses (rhinovirus, enterovirus), human coronaviruses (229E, NL63, OC43, HKU1), respiratory syncytial virus, human metapneumovirus, parainfluenza virus, and adenovirus. Please refer to the online supplement for references. Studies varied in the approach for sampling and in the used assays; in some studies, specimen collection and assays were standardized across all patients, while in other studies, sampling and assays were performed selectively. All percentages represent % of patients; some patients had more than one viral pathogen isolated
IMV invasive mechanical ventilation, TA tracheal aspirate, IFA immunofluorescence assay, NAAT (nucleic acid amplification test) includes commercial and in-house PCR, RT-PCR, and PCR multiplex, COPD chronic obstructive pulmonary disease, NIV non-invasive ventilation, PS nasopharyngeal specimen including nasopharyngeal or oropharyngeal aspirates or swabs, BAL bronchoalveolar lavage, CAP community-acquired pneumonia, ILI influenza-like illness, HCAP healthcare-associated pneumonia
aMultiple publications exist from the same cohort. We included the most recent one (Supplementary references)
Common and uncommon community-acquired respiratory viruses that may cause severe respiratory viral infection
| Virus | Epidemiologic and clinical features | Additional infection control precautionsa |
|---|---|---|
| Influenza A and influenza B | Only influenza type A viruses are known to have caused pandemics Currently circulating seasonal influenza A viruses in humans: subtype A(H1N1)pdm09 and A(H3N2) strains Currently circulating influenza B viruses: A/Victoria-like, A/Yamagata-like strains May be associated with acute myocardial infarction, myocarditis, rhabdomyolysis, acute renal failure, encephalopathy/encephalitis, and other non-pulmonary complications | Droplet |
| Picornaviruses (rhinovirus, enterovirus) | Frequently detected in critically ill patients with severe acute respiratory infection. May cause severe illness in the elderly, persons with co-morbidities including immunosuppression. | Droplet |
| Human coronaviruses (229E, NL63, OC43, HKU1) | Contact | |
| Respiratory syncytial virus | Contact | |
| Human metapneumovirus | Contact | |
| Parainfluenza (1-4) | Contact | |
| Adenoviruses | Droplet + contact | |
| Avian influenza A/H5N1, A/H5N6, A/H7N9 and other subtypes | Residence in or travel to Southeast and East Asia Exposure to poultry or visit to poultry market | Airborne + contact |
| MERS-CoV | Residence in or travel to the Arabian Peninsula Exposure to dromedary camel (in endemic areas) Nosocomial transmission risk to other patients and to healthcare workers | Airborne + contact |
| SARS-CoV | No cases have been reported since 2004 Nosocomial transmission risk to other patients and to healthcare workers | Airborne + contact |
| 2019 Novel coronavirus (2019 nCoV) | As of February 4, 2020, 20630 cases were reported from China and 23 other countries | Droplet + contact and wherever possible airborneb |
| Measlesc | Incomplete vaccination Characteristic rash. Progressive giant cell pneumonia without rash may occur in immunocompromised (Hecht’s pneumonia) | Airborne |
| Hantaviruses (e.g., Sin Nombre, Andes)c | Residence in or travel to affected areas of North, Central, or South America Exposure to rodent excretions particularly when cleaning buildings | Standard |
| Varicella-zoster virusc | Incomplete vaccination, pregnancy Often with characteristic rash | Airborne + contact |
Please refer to the online supplement for references
Infection control precautions are based on the Centers for Disease Control and Prevention at: https://www.cdc.gov/infectioncontrol/guidelines/isolation/appendix/type-duration-precautions.html#M, https://www.cdc.gov/coronavirus/mers/infection-prevention-control.html, https://www.cdc.gov/infectioncontrol/guidelines/isolation/appendix/standard-precautions.html, https://www.cdc.gov/flu/professionals/infectioncontrol/healthcaresettings.htm (all accessed on Dec 10-2019)
aAll suspected or confirmed RVIs require minimum of standard precautions. Eye protection is a reasonable addition to droplet isolation as the ocular route of infection has been documented for several common respiratory viruses
bData on the novel coronavirus are based on the WHO interim report as of February 4, 2020
cOther viral pathogens with respiratory routes of acquisition
Antiviral agents for community-acquired respiratory viral infections (RVIs) and relevance to critically ill patients
| Mechanism of action | Target Virus | Resistance | Formulation | Applicability to critically ill patients | |
|---|---|---|---|---|---|
| Amantadine | M2 ion channel blockers | Influenza A | High levels of resistance | Oral | Not recommended |
| Rimantadine | M2 ion channel blockers | Influenza A | High levels of resistance | Oral | Not recommended |
| Oseltamivir | Neuraminidase inhibitor(NAI) | Influenza A and B | Uncommon (1-3% of circulating isolates) but higher for treatment-emergent in critically ill and immunocompromised | Oral | Needs dose adjustment in patients with renal impairment No dose adjustment is necessary in patients with mild to moderate hepatic impairment Extemporaneous formulation possible or gastric delivery in intubated patients |
| Zanamivir | NAI | Influenza A and B | Rare | Intravenous; nebulized solution (investigational); inhaled dry powder (commercial formulation) | Inhibitory for most strains resistant to oseltamivir Nebulized formulation (investigational) with limited use in severely ill patients Limited systemic absorption and distribution to extrapulmonary sites of inhaled commercial product Lactose-containing powder commercial preparation with lactose carrier should not be given nebulized as it may cause ventilator circuit obstruction Intravenous formulation similar in efficacy to oseltamivir in hospitalized patients. Intravenous zanamivir is approved by the European Medicines Agency (EMA) |
| Peramivir | NAI | Influenza A and B | Uncommon (see oseltamivir above) | Intravenous | Intravenous formulation (multiple doses) similar in efficacy to oseltamivir in hospitalized patients Peramivir is approved by the FDA and EMA for uncomplicated influenza |
| Laninamivir | NAI | Influenza A and B | Rare | Inhaled, single dose, long acting | Not suitable for mechanically ventilated patients. Approved in Japan only |
| Favipiravir | Polymerase inhibitor (PB1 transcriptase), viral mutagen | Influenza A, B and other RNA viruses | Not seen in clinical strains | Oral | Under study in hospitalized patients in combination with NAIs Teratogenicity risk PK altered in critically ill with reduced drug exposure– appropriate dose regimen uncertain Approved only for stockpiling in Japan |
| Baloxavir | Polymerase inhibitor (PA cap-dependent endonuclease) | Influenza A, B | Treatment-emergence resistance common with monotherapy | Oral | Under study (multiple-dose) in combination with NAIs in hospitalized patients Not studied and PK uncertain in critically ill patients Inhibitory for strains resistant to M2Is and/or NAIs At present, baloxavir is approved in the US, Japan, and over eight other countries |
| Nitazoxanide | Host-directed and influenza HA | Influenza and other RVIs | Not seen in clinical strains | Oral | Not effective in hospitalized SARI patients. Not recommended. |
| Ribavirin | Host-directed effects, transcriptase inhibitor, viral mutagen | RSV, influenza, measles other RVIs | Not seen in clinical strains | Aerosolized, oral, intravenous (investigational) | Aerosol formulation approved in RSV-infected children but of uncertain value. All 3 formulations have been used in treating RSV-infected HSCT and SOT patients Anecdotal use of systemic ribavirin in severe measles and other paramyxovirus infections Not recommended in combination with interferons for MERS Teratogenicity risk Aerosol delivery presents risk of healthcare worker exposure |
| Cidofovir | DNA polymerase inhibitor | Adenovirus | Intravenous | Anecdotal use in severe adenovirus infections and in immunocompromised patients | |
| Acyclovir | DNA polymerase inhibitor | VZV, HSV | Uncommon except in immunocompromised | Intravenous, oral | Intravenous recommended in VZV pneumonia; addition of systemic corticosteroids recommended by some experts |
Please refer to the online supplement for references
SARI severe acute respiratory infection, RSV respiratory syncytial virus, HSCT hematopoietic stem-cell transplantation, SOT solid-organ transplantation, MERS Middle East Respiratory Syndrome, VZV varicella-zoster virus, HSV herpes simplex virus, NAI neuraminidase inhibitors, EMA European Medicines Agency, FDA Food and Drug Agency
Evidence-based supportive care is the mainstay for management of severe respiratory viral infection. Early treatment with neuraminidase inhibitors is associated with reduced mortality in severe influenza. There is a need for pragmatic and efficient trial designs, to test a variety of investigational therapeutics, individually and in combination. |