Literature DB >> 30345579

Novel protein science enabled by total chemical synthesis.

Stephen B H Kent1.   

Abstract

Chemical synthesis is a well-established method for the preparation in the research laboratory of multiple-tens-of-milligram amounts of correctly folded, high purity protein molecules. Chemically synthesized proteins enable a broad spectrum of novel protein science. Racemic mixtures consisting of d-protein and l-protein enantiomers facilitate crystallization and determination of protein structures by X-ray diffraction. d-Proteins enable the systematic development of unnatural mirror image protein molecules that bind with high affinity to natural protein targets. The d-protein form of a therapeutic target can also be used to screen natural product libraries to identify novel small molecule leads for drug development. Proteins with novel polypeptide chain topologies including branched, circular, linear-loop, and interpenetrating polypeptide chains can be constructed by chemical synthesis. Medicinal chemistry can be applied to optimize the properties of therapeutic protein molecules. Chemical synthesis has been used to redesign glycoproteins and for the a priori design and construction of covalently constrained novel protein scaffolds not found in nature. Versatile and precise labeling of protein molecules by chemical synthesis facilitates effective application of advanced physical methods including multidimensional nuclear magnetic resonance and time-resolved FTIR for the elucidation of protein structure-activity relationships. The chemistries used for total synthesis of proteins have been adapted to making artificial molecular devices and protein-inspired nanomolecular constructs. Research to develop mirror image life in the laboratory is in its very earliest stages, based on the total chemical synthesis of d-protein forms of polymerase enzymes.
© 2018 The Protein Society.

Keywords:  mirror image proteins; native chemical ligation; polypeptide chain topology; racemic protein crystallography; site-specific labeling; total chemical synthesis

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Year:  2018        PMID: 30345579      PMCID: PMC6319755          DOI: 10.1002/pro.3533

Source DB:  PubMed          Journal:  Protein Sci        ISSN: 0961-8368            Impact factor:   6.725


  120 in total

1.  Absolute Asymmetric Synthesis: The Origin, Control, and Amplification of Chirality.

Authors: 
Journal:  Angew Chem Int Ed Engl       Date:  1999-12-03       Impact factor: 15.336

2.  Racemic crystallography--easy crystals and easy structures: what's not to like?

Authors:  Brian W Matthews
Journal:  Protein Sci       Date:  2009-06       Impact factor: 6.725

3.  Direct synthesis of N-terminal thiazolidine-containing peptide thioesters from peptide hydrazides.

Authors:  Kohei Sato; Shoko Tanaka; Kazuki Yamamoto; Yosuke Tashiro; Tetsuo Narumi; Nobuyuki Mase
Journal:  Chem Commun (Camb)       Date:  2018-08-14       Impact factor: 6.222

4.  Total Chemical Synthesis and Folding of All-l and All-d Variants of Oncogenic KRas(G12V).

Authors:  Adam M Levinson; John H McGee; Andrew G Roberts; Gardner S Creech; Ting Wang; Michael T Peterson; Ronald C Hendrickson; Gregory L Verdine; Samuel J Danishefsky
Journal:  J Am Chem Soc       Date:  2017-05-22       Impact factor: 15.419

Review 5.  The coming of age of de novo protein design.

Authors:  Po-Ssu Huang; Scott E Boyken; David Baker
Journal:  Nature       Date:  2016-09-15       Impact factor: 49.962

6.  Chemically Sumoylated Histone H4 Stimulates Intranucleosomal Demethylation by the LSD1-CoREST Complex.

Authors:  Abhinav Dhall; Caroline E Weller; Aurea Chu; Patrick M M Shelton; Champak Chatterjee
Journal:  ACS Chem Biol       Date:  2017-08-30       Impact factor: 5.100

7.  Ionization state of the catalytic dyad Asp25/25' in the HIV-1 protease: NMR studies of site-specifically 13C labelled HIV-1 protease prepared by total chemical synthesis.

Authors:  Vladimir Yu Torbeev; Stephen B H Kent
Journal:  Org Biomol Chem       Date:  2012-06-01       Impact factor: 3.876

8.  A Potent d-Protein Antagonist of VEGF-A is Nonimmunogenic, Metabolically Stable, and Longer-Circulating in Vivo.

Authors:  Maruti Uppalapati; Dong Jun Lee; Kalyaneswar Mandal; Hongyan Li; Les P Miranda; Joshua Lowitz; John Kenney; Jarrett J Adams; Dana Ault-Riché; Stephen B H Kent; Sachdev S Sidhu
Journal:  ACS Chem Biol       Date:  2016-02-03       Impact factor: 5.100

9.  Scope and Limitations of Fmoc Chemistry SPPS-Based Approaches to the Total Synthesis of Insulin Lispro via Ester Insulin.

Authors:  Balamurugan Dhayalan; Kalyaneswar Mandal; Nischay Rege; Michael A Weiss; Simon H Eitel; Thomas Meier; Ralph O Schoenleber; Stephen B H Kent
Journal:  Chemistry       Date:  2017-01-10       Impact factor: 5.020

Review 10.  Total Chemical Synthesis of Modified Histones.

Authors:  Yun-Kun Qi; Hua-Song Ai; Yi-Ming Li; Baihui Yan
Journal:  Front Chem       Date:  2018-02-06       Impact factor: 5.221

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  16 in total

1.  VHH characterization. Comparison of recombinant with chemically synthesized anti-HER2 VHH.

Authors:  Lucie Hartmann; Thomas Botzanowski; Mathieu Galibert; Magali Jullian; Eric Chabrol; Gabrielle Zeder-Lutz; Valérie Kugler; Johann Stojko; Jean-Marc Strub; Gilles Ferry; Lukasz Frankiewicz; Karine Puget; Renaud Wagner; Sarah Cianférani; Jean A Boutin
Journal:  Protein Sci       Date:  2019-08-29       Impact factor: 6.725

2.  Mirror-image antiparallel β-sheets organize water molecules into superstructures of opposite chirality.

Authors:  Ethan A Perets; Daniel Konstantinovsky; Li Fu; Jiantao Chen; Hong-Fei Wang; Sharon Hammes-Schiffer; Elsa C Y Yan
Journal:  Proc Natl Acad Sci U S A       Date:  2020-12-14       Impact factor: 11.205

Review 3.  Proteomimetics as protein-inspired scaffolds with defined tertiary folding patterns.

Authors:  W Seth Horne; Tom N Grossmann
Journal:  Nat Chem       Date:  2020-02-06       Impact factor: 24.427

Review 4.  Atg8-PE protein-based in vitro biochemical approaches to autophagy studies.

Authors:  Xue Huang; Jia Yao; Lu Liu; Yu Luo; Aimin Yang
Journal:  Autophagy       Date:  2022-01-24       Impact factor: 13.391

5.  Methods and Applications of Expressed Protein Ligation.

Authors:  Zhipeng A Wang; Philip A Cole
Journal:  Methods Mol Biol       Date:  2020

Review 6.  Diabetes-Associated Mutations in Proinsulin Provide a "Molecular Rheostat" of Nascent Foldability.

Authors:  Balamurugan Dhayalan; Michael A Weiss
Journal:  Curr Diab Rep       Date:  2022-02-04       Impact factor: 4.810

7.  Acyl Transfer Catalytic Activity in De Novo Designed Protein with N-Terminus of α-Helix As Oxyanion-Binding Site.

Authors:  Elise A Naudin; Alastair G McEwen; Sophia K Tan; Pierre Poussin-Courmontagne; Jean-Louis Schmitt; Catherine Birck; William F DeGrado; Vladimir Torbeev
Journal:  J Am Chem Soc       Date:  2021-02-26       Impact factor: 16.383

8.  The Ancestral N-Terminal Domain of Big Defensins Drives Bacterially Triggered Assembly into Antimicrobial Nanonets.

Authors:  Karine Loth; Agnès Vergnes; Cairé Barreto; Sébastien N Voisin; Hervé Meudal; Jennifer Da Silva; Albert Bressan; Nawal Belmadi; Evelyne Bachère; Vincent Aucagne; Chantal Cazevielle; Hélène Marchandin; Rafael Diego Rosa; Philippe Bulet; Lhousseine Touqui; Agnès F Delmas; Delphine Destoumieux-Garzón
Journal:  mBio       Date:  2019-10-22       Impact factor: 7.867

9.  In Situ Cyclization of Proteins (INCYPRO): Cross-Link Derivatization Modulates Protein Stability.

Authors:  Saskia Neubacher; Jordy M Saya; Alessia Amore; Tom N Grossmann
Journal:  J Org Chem       Date:  2019-12-16       Impact factor: 4.354

10.  In Cellulo Protein Semi-Synthesis from Endogenous and Exogenous Fragments Using the Ultra-Fast Split Gp41-1 Intein.

Authors:  Maniraj Bhagawati; Simon Hoffmann; Katharina S Höffgen; Jacob Piehler; Karin B Busch; Henning D Mootz
Journal:  Angew Chem Int Ed Engl       Date:  2020-09-11       Impact factor: 15.336

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