Literature DB >> 27050677

Small molecules, big targets: drug discovery faces the protein-protein interaction challenge.

Duncan E Scott1, Andrew R Bayly1,2, Chris Abell1, John Skidmore3.   

Abstract

Protein-protein interactions (PPIs) are of pivotal importance in the regulation of biological systems and are consequently implicated in the development of disease states. Recent work has begun to show that, with the right tools, certain classes of PPI can yield to the efforts of medicinal chemists to develop inhibitors, and the first PPI inhibitors have reached clinical development. In this Review, we describe the research leading to these breakthroughs and highlight the existence of groups of structurally related PPIs within the PPI target class. For each of these groups, we use examples of successful discovery efforts to illustrate the research strategies that have proved most useful.

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Year:  2016        PMID: 27050677     DOI: 10.1038/nrd.2016.29

Source DB:  PubMed          Journal:  Nat Rev Drug Discov        ISSN: 1474-1776            Impact factor:   84.694


  152 in total

Review 1.  Principles of protein-protein interactions: what are the preferred ways for proteins to interact?

Authors:  Ozlem Keskin; Attila Gursoy; Buyong Ma; Ruth Nussinov
Journal:  Chem Rev       Date:  2008-03-21       Impact factor: 60.622

2.  Atomic interactions and profile of small molecules disrupting protein-protein interfaces: the TIMBAL database.

Authors:  Alícia P Higueruelo; Adrian Schreyer; G Richard J Bickerton; Will R Pitt; Colin R Groom; Tom L Blundell
Journal:  Chem Biol Drug Des       Date:  2009-11       Impact factor: 2.817

3.  New substructure filters for removal of pan assay interference compounds (PAINS) from screening libraries and for their exclusion in bioassays.

Authors:  Jonathan B Baell; Georgina A Holloway
Journal:  J Med Chem       Date:  2010-04-08       Impact factor: 7.446

4.  Screening multicomponent reactions for X-linked inhibitor of apoptosis-baculoviral inhibitor of apoptosis protein repeats domain binder.

Authors:  Ilaria Monfardini; Jui-Wen Huang; Barbara Beck; Jason F Cellitti; Maurizio Pellecchia; Alexander Dömling
Journal:  J Med Chem       Date:  2011-01-11       Impact factor: 7.446

5.  Fragment-based design of small molecule X-linked inhibitor of apoptosis protein inhibitors.

Authors:  Jui-Wen Huang; Ziming Zhang; Bainan Wu; Jason F Cellitti; Xiyun Zhang; Russell Dahl; Chung-Wai Shiau; Kate Welsh; Aras Emdadi; John L Stebbins; John C Reed; Maurizio Pellecchia
Journal:  J Med Chem       Date:  2008-11-27       Impact factor: 7.446

6.  Beta-peptidic peptidomimetics.

Authors:  Dieter Seebach; James Gardiner
Journal:  Acc Chem Res       Date:  2008-06-26       Impact factor: 22.384

7.  Discovery of a small-molecule inhibitor and cellular probe of Keap1-Nrf2 protein-protein interaction.

Authors:  Longqin Hu; Sadagopan Magesh; Lin Chen; Lili Wang; Timothy A Lewis; Yu Chen; Carol Khodier; Daigo Inoyama; Lesa J Beamer; Thomas J Emge; Jian Shen; John E Kerrigan; Ah-Ng Tony Kong; Sivaraman Dandapani; Michelle Palmer; Stuart L Schreiber; Benito Munoz
Journal:  Bioorg Med Chem Lett       Date:  2013-03-14       Impact factor: 2.823

8.  Benzazepinones and benzoxazepinones as antagonists of inhibitor of apoptosis proteins (IAPs) selective for the second baculovirus IAP repeat (BIR2) domain.

Authors:  Andrew F Donnell; Christophe Michoud; Kenneth C Rupert; Xiaochun Han; Douglas Aguilar; Karl B Frank; Adrian J Fretland; Lin Gao; Barry Goggin; J Heather Hogg; Kyoungja Hong; Cheryl A Janson; Robert F Kester; Norman Kong; Kang Le; Shirley Li; Weiling Liang; Louis J Lombardo; Yan Lou; Christine M Lukacs; Steven Mischke; John A Moliterni; Ann Polonskaia; Andrew D Schutt; Dave S Solis; Anthony Specian; Robert T Taylor; Martin Weisel; Stacy W Remiszewski
Journal:  J Med Chem       Date:  2013-10-01       Impact factor: 7.446

9.  2P2Idb: a structural database dedicated to orthosteric modulation of protein-protein interactions.

Authors:  Marie Jeanne Basse; Stéphane Betzi; Raphaël Bourgeas; Sofia Bouzidi; Bernard Chetrit; Véronique Hamon; Xavier Morelli; Philippe Roche
Journal:  Nucleic Acids Res       Date:  2012-11-30       Impact factor: 16.971

Review 10.  Protein-protein interaction detection: methods and analysis.

Authors:  V Srinivasa Rao; K Srinivas; G N Sujini; G N Sunand Kumar
Journal:  Int J Proteomics       Date:  2014-02-17
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  244 in total

1.  Fr-PPIChem: An Academic Compound Library Dedicated to Protein-Protein Interactions.

Authors:  Nicolas Bosc; Christophe Muller; Laurent Hoffer; David Lagorce; Stéphane Bourg; Carine Derviaux; Marie-Edith Gourdel; Jean-Christophe Rain; Thomas W Miller; Bruno O Villoutreix; Maria A Miteva; Pascal Bonnet; Xavier Morelli; Olivier Sperandio; Philippe Roche
Journal:  ACS Chem Biol       Date:  2020-05-05       Impact factor: 5.100

2.  Protein Interactomics by Two-Hybrid Methods.

Authors:  Soon Gang Choi; Aaron Richardson; Luke Lambourne; David E Hill; Marc Vidal
Journal:  Methods Mol Biol       Date:  2018

3.  Targeting TRAF6 E3 ligase activity with a small-molecule inhibitor combats autoimmunity.

Authors:  Jara K Brenke; Grzegorz M Popowicz; Kenji Schorpp; Ina Rothenaigner; Manfred Roesner; Isabel Meininger; Cédric Kalinski; Larissa Ringelstetter; Omar R'kyek; Gerrit Jürjens; Michelle Vincendeau; Oliver Plettenburg; Michael Sattler; Daniel Krappmann; Kamyar Hadian
Journal:  J Biol Chem       Date:  2018-06-27       Impact factor: 5.157

4.  The OncoPPi Portal: an integrative resource to explore and prioritize protein-protein interactions for cancer target discovery.

Authors:  Andrei A Ivanov; Brian Revennaugh; Lauren Rusnak; Valentina Gonzalez-Pecchi; Xiulei Mo; Margaret A Johns; Yuhong Du; Lee A D Cooper; Carlos S Moreno; Fadlo R Khuri; Haian Fu
Journal:  Bioinformatics       Date:  2018-04-01       Impact factor: 6.937

5.  Diflunisal targets the HMGB1/CXCL12 heterocomplex and blocks immune cell recruitment.

Authors:  Federica De Leo; Giacomo Quilici; Mario Tirone; Francesco De Marchis; Valeria Mannella; Chiara Zucchelli; Alessandro Preti; Alessandro Gori; Maura Casalgrandi; Rosanna Mezzapelle; Marco E Bianchi; Giovanna Musco
Journal:  EMBO Rep       Date:  2019-08-14       Impact factor: 8.807

6.  Context-Specific and Proximity-Dependent Labeling for the Proteomic Analysis of Spatiotemporally Defined Protein Complexes with Split-BioID.

Authors:  Cinthia Amaya Ramirez; Stefanie Egetemaier; Julien Béthune
Journal:  Methods Mol Biol       Date:  2021

7.  Identifying hydrophobic protein patches to inform protein interaction interfaces.

Authors:  Nicholas B Rego; Erte Xi; Amish J Patel
Journal:  Proc Natl Acad Sci U S A       Date:  2021-02-09       Impact factor: 11.205

Review 8.  Polymerases of paramyxoviruses and pneumoviruses.

Authors:  Rachel Fearns; Richard K Plemper
Journal:  Virus Res       Date:  2017-01-16       Impact factor: 3.303

Review 9.  In-Cell NMR Spectroscopy of Intrinsically Disordered Proteins.

Authors:  Nicholas Sciolino; David S Burz; Alexander Shekhtman
Journal:  Proteomics       Date:  2019-01-15       Impact factor: 3.984

10.  A simple fluorescent assay for the discovery of protein-protein interaction inhibitors.

Authors:  Mona Al-Mugotir; Carol Kolar; Krysten Vance; David L Kelly; Amarnath Natarajan; Gloria E O Borgstahl
Journal:  Anal Biochem       Date:  2019-01-30       Impact factor: 3.365

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