Literature DB >> 31994439

RNA modifications and cancer.

Phensinee Haruehanroengra1, Ya Ying Zheng1, Yubin Zhou2, Yun Huang2, Jia Sheng1.   

Abstract

RNA plays essential roles in not only translating nucleic acids into proteins, but also in gene regulation, environmental interactions and many human diseases. Nature uses over 150 chemical modifications to decorate RNA and diversify its functions. With the fast-growing RNA research in the burgeoning field of 'epitranscriptome', a term describes post-transcriptional RNA modifications that can dynamically change the transcriptome, it becomes clear that these modifications participate in modulating gene expression and controlling the cell fate, thereby igniting the new interests in RNA-based drug discovery. The dynamics of these RNA chemical modifications is orchestrated by coordinated actions of an array of writer, reader and eraser proteins. Deregulated expression of these RNA modifying proteins can lead to many human diseases including cancer. In this review, we highlight several critical modifications, namely m6A, m1A, m5C, inosine and pseudouridine, in both coding and non-coding RNAs. In parallel, we present a few other cancer-related tRNA and rRNA modifications. We further discuss their roles in cancer promotion or tumour suppression. Understanding the molecular mechanisms underlying the biogenesis and turnover of these RNA modifications will be of great significance in the design and development of novel anticancer drugs.

Entities:  

Keywords:  RNA modifications; cancer; epitranscriptome

Year:  2020        PMID: 31994439      PMCID: PMC7567502          DOI: 10.1080/15476286.2020.1722449

Source DB:  PubMed          Journal:  RNA Biol        ISSN: 1547-6286            Impact factor:   4.652


  219 in total

1.  Somatic cancer mutations in the DNMT2 tRNA methyltransferase alter its catalytic properties.

Authors:  Winfried Elhardt; Raghuvaran Shanmugam; Tomasz P Jurkowski; Albert Jeltsch
Journal:  Biochimie       Date:  2015-03-05       Impact factor: 4.079

Review 2.  The role of A-to-I RNA editing in cancer development.

Authors:  Xiaoyan Xu; Yumeng Wang; Han Liang
Journal:  Curr Opin Genet Dev       Date:  2017-11-08       Impact factor: 5.578

3.  c-Myc is a universal amplifier of expressed genes in lymphocytes and embryonic stem cells.

Authors:  Zuqin Nie; Gangqing Hu; Gang Wei; Kairong Cui; Arito Yamane; Wolfgang Resch; Ruoning Wang; Douglas R Green; Lino Tessarollo; Rafael Casellas; Keji Zhao; David Levens
Journal:  Cell       Date:  2012-09-28       Impact factor: 41.582

Review 4.  Transfer RNA methytransferases and their corresponding modifications in budding yeast and humans: activities, predications, and potential roles in human health.

Authors:  William L Towns; Thomas J Begley
Journal:  DNA Cell Biol       Date:  2011-12-22       Impact factor: 3.311

Review 5.  Functions and regulation of RNA editing by ADAR deaminases.

Authors:  Kazuko Nishikura
Journal:  Annu Rev Biochem       Date:  2010       Impact factor: 23.643

6.  Specific small nucleolar RNA expression profiles in acute leukemia.

Authors:  W Valleron; E Laprevotte; E-F Gautier; C Quelen; C Demur; E Delabesse; X Agirre; F Prósper; T Kiss; P Brousset
Journal:  Leukemia       Date:  2012-04-23       Impact factor: 11.528

7.  rRNA pseudouridylation defects affect ribosomal ligand binding and translational fidelity from yeast to human cells.

Authors:  Karen Jack; Cristian Bellodi; Dori M Landry; Rachel O Niederer; Arturas Meskauskas; Sharmishtha Musalgaonkar; Noam Kopmar; Olya Krasnykh; Alison M Dean; Sunnie R Thompson; Davide Ruggero; Jonathan D Dinman
Journal:  Mol Cell       Date:  2011-11-18       Impact factor: 17.970

8.  Endogenous tRNA-Derived Fragments Suppress Breast Cancer Progression via YBX1 Displacement.

Authors:  Hani Goodarzi; Xuhang Liu; Hoang C B Nguyen; Steven Zhang; Lisa Fish; Sohail F Tavazoie
Journal:  Cell       Date:  2015-05-07       Impact factor: 41.582

9.  AlkB homolog 3-mediated tRNA demethylation promotes protein synthesis in cancer cells.

Authors:  Yuko Ueda; Ikumi Ooshio; Yasuyuki Fusamae; Kaori Kitae; Megumi Kawaguchi; Kentaro Jingushi; Hiroaki Hase; Kazuo Harada; Kazumasa Hirata; Kazutake Tsujikawa
Journal:  Sci Rep       Date:  2017-02-13       Impact factor: 4.379

Review 10.  N6-methyladenosine links RNA metabolism to cancer progression.

Authors:  Dongjun Dai; Hanying Wang; Liyuan Zhu; Hongchuan Jin; Xian Wang
Journal:  Cell Death Dis       Date:  2018-01-26       Impact factor: 8.469

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  18 in total

Review 1.  The occurrence order and cross-talk of different tRNA modifications.

Authors:  Jing Li; Wen-Yu Zhu; Wen-Qing Yang; Cai-Tao Li; Ru-Juan Liu
Journal:  Sci China Life Sci       Date:  2021-04-19       Impact factor: 6.038

Review 2.  RNA Epigenetics: Fine-Tuning Chromatin Plasticity and Transcriptional Regulation, and the Implications in Human Diseases.

Authors:  Amber Willbanks; Shaun Wood; Jason X Cheng
Journal:  Genes (Basel)       Date:  2021-04-22       Impact factor: 4.096

3.  m6A-Related lncRNAs Are Potential Prognostic Biomarkers of Cervical Cancer and Affect Immune Infiltration.

Authors:  Haixia Jia; Suhua Hao; Meiting Cao; Lifang Wang; Hua Bai; Wen Shui; Xiaotang Yang
Journal:  Dis Markers       Date:  2022-04-11       Impact factor: 3.464

4.  Manganese Ions Individually Alter the Reverse Transcription Signature of Modified Ribonucleosides.

Authors:  Marco Kristen; Johanna Plehn; Virginie Marchand; Kristina Friedland; Yuri Motorin; Mark Helm; Stephan Werner
Journal:  Genes (Basel)       Date:  2020-08-18       Impact factor: 4.096

Review 5.  Jack of all trades? The versatility of RNA in DNA double-strand break repair.

Authors:  Ruth F Ketley; Monika Gullerova
Journal:  Essays Biochem       Date:  2020-10-26       Impact factor: 8.000

Review 6.  N6-methyladenosine as a biological and clinical determinant in colorectal cancer: progression and future direction.

Authors:  Jinming Li; Lei Liang; Yongzhi Yang; Xinxiang Li; Yanlei Ma
Journal:  Theranostics       Date:  2021-01-01       Impact factor: 11.556

7.  Analysis of m6A RNA Methylation-Related Genes in Liver Hepatocellular Carcinoma and Their Correlation with Survival.

Authors:  Yong Li; Dandan Qi; Baoli Zhu; Xin Ye
Journal:  Int J Mol Sci       Date:  2021-02-02       Impact factor: 5.923

8.  m5C-Related Signatures for Predicting Prognosis in Cutaneous Melanoma with Machine Learning.

Authors:  Maoxin Huang; Yi Zhang; Xiaohong Ou; Caiyun Wang; Xueqing Wang; Bibo Qin; Qiong Zhang; Jie Yu; Jianxiang Zhang; Jianbin Yu
Journal:  J Oncol       Date:  2021-08-04       Impact factor: 4.375

9.  Immunohistochemical validation study of 15-gene biomarker panel predictive of benefit from adjuvant chemotherapy in resected non-small-cell lung cancer: analysis of JBR.10.

Authors:  Stacy Grieve; Keyue Ding; Jonathan Moore; Mathew Finniss; Ayush Ray; Miranda Lees; Faisal Hossain; Alli Murugesan; Jane Agar; Cenk Acar; James Taylor; Frances A Shepherd; Tony Reiman
Journal:  ESMO Open       Date:  2020-03

Review 10.  The Role of N6-Methyladenosine (m6A) Methylation Modifications in Hematological Malignancies.

Authors:  Yan Zhao; Hongling Peng
Journal:  Cancers (Basel)       Date:  2022-01-11       Impact factor: 6.639

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