Literature DB >> 33922187

RNA Epigenetics: Fine-Tuning Chromatin Plasticity and Transcriptional Regulation, and the Implications in Human Diseases.

Amber Willbanks1, Shaun Wood1, Jason X Cheng1.   

Abstract

Chromatin structure plays an essential role in eukaryotic gene expression and cell identity. Traditionally, DNA and histone modifications have been the focus of chromatin regulation; however, recent molecular and imaging studies have revealed an intimate connection between RNA epigenetics and chromatin structure. Accumulating evidence suggests that RNA serves as the interplay between chromatin and the transcription and splicing machineries within the cell. Additionally, epigenetic modifications of nascent RNAs fine-tune these interactions to regulate gene expression at the co- and post-transcriptional levels in normal cell development and human diseases. This review will provide an overview of recent advances in the emerging field of RNA epigenetics, specifically the role of RNA modifications and RNA modifying proteins in chromatin remodeling, transcription activation and RNA processing, as well as translational implications in human diseases.

Entities:  

Keywords:  2’-O-methylation (Nm); 5-methylcytosine (m5C); 5’ cap (5’ cap); 7-methylguanosine (m7G); A-to-I; C-to-U; MYC; N6-methyladenosine (m6A); NOL1/NOP2/sun domain (NSUN); R-loops; RNA editing

Year:  2021        PMID: 33922187     DOI: 10.3390/genes12050627

Source DB:  PubMed          Journal:  Genes (Basel)        ISSN: 2073-4425            Impact factor:   4.096


  394 in total

Review 1.  C-to-U RNA editing: mechanisms leading to genetic diversity.

Authors:  Valerie Blanc; Nicholas O Davidson
Journal:  J Biol Chem       Date:  2002-11-20       Impact factor: 5.157

2.  Suppression of RNA recognition by Toll-like receptors: the impact of nucleoside modification and the evolutionary origin of RNA.

Authors:  Katalin Karikó; Michael Buckstein; Houping Ni; Drew Weissman
Journal:  Immunity       Date:  2005-08       Impact factor: 31.745

Review 3.  The role of chromatin during transcription.

Authors:  Bing Li; Michael Carey; Jerry L Workman
Journal:  Cell       Date:  2007-02-23       Impact factor: 41.582

Review 4.  Eukaryotic core promoters and the functional basis of transcription initiation.

Authors:  Vanja Haberle; Alexander Stark
Journal:  Nat Rev Mol Cell Biol       Date:  2018-10       Impact factor: 94.444

Review 5.  Transcription elongation control by the 7SK snRNP complex: Releasing the pause.

Authors:  Ryan P McNamara; Curtis W Bacon; Iván D'Orso
Journal:  Cell Cycle       Date:  2016-05-06       Impact factor: 4.534

6.  5-methylcytosine promotes pathogenesis of bladder cancer through stabilizing mRNAs.

Authors:  Xin Chen; Ang Li; Bao-Fa Sun; Ying Yang; Ya-Nan Han; Xun Yuan; Ri-Xin Chen; Wen-Su Wei; Yanchao Liu; Chun-Chun Gao; Yu-Sheng Chen; Mengmeng Zhang; Xiao-Dan Ma; Zhuo-Wei Liu; Jun-Hang Luo; Cong Lyu; Hai-Lin Wang; Jinbiao Ma; Yong-Liang Zhao; Fang-Jian Zhou; Ying Huang; Dan Xie; Yun-Gui Yang
Journal:  Nat Cell Biol       Date:  2019-07-29       Impact factor: 28.824

Review 7.  Adenosine-to-inosine RNA editing in the immune system: friend or foe?

Authors:  Taisuke Nakahama; Yukio Kawahara
Journal:  Cell Mol Life Sci       Date:  2020-01-29       Impact factor: 9.261

Review 8.  Functions and regulation of RNA editing by ADAR deaminases.

Authors:  Kazuko Nishikura
Journal:  Annu Rev Biochem       Date:  2010       Impact factor: 23.643

9.  Long Noncoding RNA PVT1 Promotes Prostate Cancer Metastasis by Increasing NOP2 Expression via Targeting Tumor Suppressor MicroRNAs.

Authors:  Feng Sun; Ke Wu; Zhixian Yao; Xingyu Mu; Zhong Zheng; Menghao Sun; Yong Wang; Zhihong Liu; Yiyong Zhu
Journal:  Onco Targets Ther       Date:  2020-07-10       Impact factor: 4.147

10.  Structural insights into the RNA methyltransferase domain of METTL16.

Authors:  Agnieszka Ruszkowska; Milosz Ruszkowski; Zbigniew Dauter; Jessica A Brown
Journal:  Sci Rep       Date:  2018-03-28       Impact factor: 4.379

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  7 in total

1.  The nuclear and cytoplasmic activities of RNA polymerase III, and an evolving transcriptome for surveillance.

Authors:  Alan C Kessler; Richard J Maraia
Journal:  Nucleic Acids Res       Date:  2021-12-02       Impact factor: 16.971

Review 2.  The Methylation Game: Epigenetic and Epitranscriptomic Dynamics of 5-Methylcytosine.

Authors:  Adele Alagia; Monika Gullerova
Journal:  Front Cell Dev Biol       Date:  2022-06-03

3.  Exploring the Epigenetic Regulatory Role of m6A-Associated SNPs in Type 2 Diabetes Pathogenesis.

Authors:  Miao Chen; Weimin Lin; Jianru Yi; Zhihe Zhao
Journal:  Pharmgenomics Pers Med       Date:  2021-10-27

Review 4.  The role of RNA modification in hepatocellular carcinoma.

Authors:  Qiang Feng; Dongxu Wang; Tianyi Xue; Chao Lin; Yongjian Gao; Liqun Sun; Ye Jin; Dianfeng Liu
Journal:  Front Pharmacol       Date:  2022-09-02       Impact factor: 5.988

5.  Whole Exome Sequencing in a Population With Severe Congenital Anomalies of Kidney and Urinary Tract.

Authors:  Meredith Harris; Meredith P Schuh; David McKinney; Kenneth Kaufman; Elif Erkan
Journal:  Front Pediatr       Date:  2022-08-04       Impact factor: 3.569

Review 6.  Impact of One-Carbon Metabolism-Driving Epitranscriptome as a Therapeutic Target for Gastrointestinal Cancer.

Authors:  Yu Takeda; Ryota Chijimatsu; Andrea Vecchione; Takahiro Arai; Toru Kitagawa; Ken Ofusa; Masami Yabumoto; Takaaki Hirotsu; Hidetoshi Eguchi; Yuichiro Doki; Hideshi Ishii
Journal:  Int J Mol Sci       Date:  2021-07-06       Impact factor: 5.923

7.  Position 34 of tRNA is a discriminative element for m5C38 modification by human DNMT2.

Authors:  Zhi-Xuan Huang; Jing Li; Qing-Ping Xiong; Hao Li; En-Duo Wang; Ru-Juan Liu
Journal:  Nucleic Acids Res       Date:  2021-12-16       Impact factor: 16.971

  7 in total

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