| Literature DB >> 31979296 |
Tieshan Teng1,2, Xianghui Li1, Lei Zhang1, Yanzhang Li1.
Abstract
<span class="Species">Pantoea dispersa W18, isolated from contaminated soil, was found to exert antimicrobial activity against <span class="Species">Mycobacterium species, including Mycobacterium tuberculosis, an important human pathogen. Here, the anti-mycobacterial compound produced by Pantoea dispersa W18 was purified by a combination of hydrophobic interaction chromatography, cation exchange chromatography, and reverse phase HPLC. Active compounds from Pantoea dispersa W18 were identified as a natural peptide named pantocin wh-1 with a 1927 Da molecular weight. The primary structure of this compound was detected by N-terminal amino acid sequencing. The amino acid sequence of pantocin wh-1 consisted of 16 amino acid residues with a cyclic structure. The pantocin wh-1 could be inactivated by protease K, but was heat stable and unaffected by pH (2-12). However, the activity was not completely inactivated by trypsin and pepsin. This is the first report of a cyclic polypeptide purified from a strain of Pantoea dispersa.Entities:
Keywords: Mycobacterium tuberculosis; Pantoea dispersa; peptide natural products
Year: 2020 PMID: 31979296 PMCID: PMC7036871 DOI: 10.3390/molecules25030485
Source DB: PubMed Journal: Molecules ISSN: 1420-3049 Impact factor: 4.411
Active natural products secreted by Pantoea species.
| Strain | Name | Structure | Ref. |
|---|---|---|---|
| pantocin B | ( | [ | |
| pantocin A | unknown | ||
| andrimid |
| [ | |
| 2-amino-3-(oxirane-2, 3-dicarboxamido)-propanoyl-valine | [ | ||
| herbicolin O | unknown | ||
| herbicolin I | unknown | ||
| phenazine | [ | ||
| 112Y | unknown | ||
| herbicolin A | ( | [ | |
| herbicolin B |
Figure 1(A) On a plate of M. smegmatis, a yellow colony is shown to secrete active substances to inhibit the growth of M. smegmatis mc2 155; (B) using the oxford cup method, the cell-free supernatant (CFS) of the fermentation broth of this unknown strain exhibits antibacterial activity against M. smegmatis mc2 155.
Figure 2Time course of pantocin wh-1 production during the growth of P. dispersa W18 in: (A) simple 7H9 medium; (B) Spizizen’s medium; (C) LB medium; and (D) MH medium. The amount of pantocin wh-1 is expressed as arbitrary units per milliliter (AU/mL). The indicator strain was M. smegmatis mc2 155.
Purification of pantocinwh-1 produced by Pantoea dispersa W18.
| Method | Vol(ml) | Total Activity (AU) 1 | Yield (%) | Total Protein (mg) 2 | Purification (fold) |
|---|---|---|---|---|---|
| Supernatant | 2000 | 1.60 × 106 | 100 | 16,520 | 1 |
| SP-Sepharose | 350 | 5 × 105 | 80 | 3537 | 75 |
| Octyl-Sepharose | 120 | 5 × 105 | 80 | 623 | 212 |
| RP-HPLC | 4 | 2.3 × 105 | 23 | 1.52 | 963 |
1 Antibacterial activity (expressed in arbitrary units (AU)) was assayed by the spot-on-lawn method using M. smegmatis mc2 155 as an indicator strain. 2 The protein concentration (in mg/mL) was estimated with a NanoDrop ND-1000 (A280).
Amino acid sequences of pantocin wh-1 fragments obtained after different fragmentation strategies.
| Treatment | Molecular Mass of Fragment (Da) | Amino Acid Sequence |
|---|---|---|
| 0.6 M HCl | 851.94 | YVFGYGF |
| BNPS-skatole | 1163.3 | FGYGFNCAVW |
| Trypsin | 848.04 | MWCYVF |
| 1190.43 | WVMWCYVFG | |
| Merge | 1927.76 | —VMWCYVFGYGFNCAVW— |
Figure 3Bactericidal activity of pantocin wh-1 against M. smegmatis mc2 155.
Figure 4Antimicrobial activity of pantocin wh-1 in a mouse model.
Source, activity, and target of anti-TB natural products.
| Compound | Source | Strategy | Target | MIC (μM) | Ref. |
|---|---|---|---|---|---|
| Lassomycin | In situ cultivation and prolonged incubation | ClpC1 | 0.42–1.57 | [ | |
| Ecumicin | High-throughput screening and stress of nutrient limitation | ClpC1 | 0.13–0.3 | [ | |
| Acyldepsipeptides |
| Stress of nutrient limitation | ClpP | 31–65 | [ |
| Pyridomycin |
| Genetic manipulation | InhA | 0.72–1.44 | [ |
| Thiolactomycin | Genetic manipulation | β-ketoacyl-ACP synthase | 92.5 | [ | |
| Cyclomarin A | Stress of nutrient limitation | ClpC1 | 0.3–2.5 | [ | |
| Teixobactin |
| ichip | lipid II | 0.125 | [ |
| Ilamycins | Gene inactivation and isotope labeled | — | 0.0098 | [ |