Literature DB >> 31974307

Structural instability and divergence from conserved residues underlie intracellular retention of mammalian odorant receptors.

Kentaro Ikegami1,2, Claire A de March1, Maira H Nagai1,3, Soumadwip Ghosh4, Matthew Do1, Ruchira Sharma1, Elise S Bruguera1, Yueyang Eric Lu1, Yosuke Fukutani1,2, Nagarajan Vaidehi4, Masafumi Yohda2, Hiroaki Matsunami5,6.   

Abstract

Mammalian odorant receptors are a diverse and rapidly evolving set of G protein-coupled receptors expressed in olfactory cilia membranes. Most odorant receptors show little to no cell surface expression in nonolfactory cells due to endoplasmic reticulum retention, which has slowed down biochemical studies. Here we provide evidence that structural instability and divergence from conserved residues of individual odorant receptors underlie intracellular retention using a combination of large-scale screening of odorant receptors cell surface expression in heterologous cells, point mutations, structural modeling, and machine learning techniques. We demonstrate the importance of conserved residues by synthesizing consensus odorant receptors that show high levels of cell surface expression similar to conventional G protein-coupled receptors. Furthermore, we associate in silico structural instability with poor cell surface expression using molecular dynamics simulations. We propose an enhanced evolutionary capacitance of olfactory sensory neurons that enable the functional expression of odorant receptors with cryptic mutations.

Entities:  

Keywords:  GPCR; olfaction; protein trafficking

Mesh:

Substances:

Year:  2020        PMID: 31974307      PMCID: PMC7022149          DOI: 10.1073/pnas.1915520117

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  61 in total

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2.  RTP family members induce functional expression of mammalian odorant receptors.

Authors:  Harumi Saito; Momoka Kubota; Richard W Roberts; Qiuyi Chi; Hiroaki Matsunami
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3.  Expression of an olfactory receptor in Escherichia coli: purification, reconstitution, and ligand binding.

Authors:  H Kiefer; J Krieger; J D Olszewski; G Von Heijne; G D Prestwich; H Breer
Journal:  Biochemistry       Date:  1996-12-17       Impact factor: 3.162

4.  G protein-coupled odorant receptors: From sequence to structure.

Authors:  Claire A de March; Soo-Kyung Kim; Serge Antonczak; William A Goddard; Jérôme Golebiowski
Journal:  Protein Sci       Date:  2015-06-22       Impact factor: 6.725

5.  Evidence against the role of rhodopsin in rod outer segment binding to RPE cells.

Authors:  D W Laird; R S Molday
Journal:  Invest Ophthalmol Vis Sci       Date:  1988-03       Impact factor: 4.799

6.  Evolutionary Capacitance Emerges Spontaneously during Adaptation to Environmental Changes.

Authors:  Paul Nelson; Joanna Masel
Journal:  Cell Rep       Date:  2018-10-02       Impact factor: 9.423

7.  Cryptic variation in morphological evolution: HSP90 as a capacitor for loss of eyes in cavefish.

Authors:  Nicolas Rohner; Dan F Jarosz; Johanna E Kowalko; Masato Yoshizawa; William R Jeffery; Richard L Borowsky; Susan Lindquist; Clifford J Tabin
Journal:  Science       Date:  2013-12-13       Impact factor: 47.728

Review 8.  Therapeutic potential of ectopic olfactory and taste receptors.

Authors:  Sung-Joon Lee; Inge Depoortere; Hanns Hatt
Journal:  Nat Rev Drug Discov       Date:  2019-02       Impact factor: 84.694

9.  G Protein-Coupled Receptors Contain Two Conserved Packing Clusters.

Authors:  Omar B Sanchez-Reyes; Aidan L G Cooke; Dale B Tranter; Dawood Rashid; Markus Eilers; Philip J Reeves; Steven O Smith
Journal:  Biophys J       Date:  2017-06-06       Impact factor: 3.699

Review 10.  Consensus protein design.

Authors:  Benjamin T Porebski; Ashley M Buckle
Journal:  Protein Eng Des Sel       Date:  2016-06-05       Impact factor: 1.650

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  13 in total

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Authors:  Tomoya Yoshii; Ikumi Takayama; Yosuke Fukutani; Takashi Ikuta; Kenzo Maehashi; Masafumi Yohda
Journal:  Anal Sci       Date:  2022-03-09       Impact factor: 2.081

Review 2.  Deconstructing the transmembrane core of class A G protein-coupled receptors.

Authors:  Steven O Smith
Journal:  Trends Biochem Sci       Date:  2021-09-16       Impact factor: 13.807

3.  Interactions among key residues regulate mammalian odorant receptor trafficking.

Authors:  Rui Xu; Xiaojing Cong; Qian Zheng; Lun Xu; Mengjue J Ni; Claire A de March; Hiroaki Matsunami; Jérôme Golebiowski; Minghong Ma; Yiqun Yu
Journal:  FASEB J       Date:  2022-07       Impact factor: 5.834

Review 4.  The role of the odorant receptors in the formation of the sensory map.

Authors:  Simona Francia; Claudia Lodovichi
Journal:  BMC Biol       Date:  2021-08-27       Impact factor: 7.431

5.  Modulation of the combinatorial code of odorant receptor response patterns in odorant mixtures.

Authors:  Claire A de March; William B Titlow; Tomoko Sengoku; Patrick Breheny; Hiroaki Matsunami; Timothy S McClintock
Journal:  Mol Cell Neurosci       Date:  2020-02-12       Impact factor: 4.314

6.  Structural instability and divergence from conserved residues underlie intracellular retention of mammalian odorant receptors.

Authors:  Kentaro Ikegami; Claire A de March; Maira H Nagai; Soumadwip Ghosh; Matthew Do; Ruchira Sharma; Elise S Bruguera; Yueyang Eric Lu; Yosuke Fukutani; Nagarajan Vaidehi; Masafumi Yohda; Hiroaki Matsunami
Journal:  Proc Natl Acad Sci U S A       Date:  2020-01-23       Impact factor: 11.205

7.  Sequence coevolution and structure stabilization modulate olfactory receptor expression.

Authors:  Soumadwip Ghosh; Claire A de March; Sergio Branciamore; Sahar Kaleem; Hiroaki Matsunami; Nagarajan Vaidehi
Journal:  Biophys J       Date:  2022-01-20       Impact factor: 4.033

8.  Hot Spot Mutagenesis Improves the Functional Expression of Unique Mammalian Odorant Receptors.

Authors:  Yosuke Fukutani; Yuko Nakamura; Nonoko Muto; Shunta Miyanaga; Reina Kanemaki; Kentaro Ikegami; Keiichi Noguchi; Ikuroh Ohsawa; Hiroaki Matsunami; Masafumi Yohda
Journal:  Int J Mol Sci       Date:  2021-12-28       Impact factor: 5.923

9.  Two entry tunnels in mouse TAAR9 suggest the possibility of multi-entry tunnels in olfactory receptors.

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10.  Machine Learning Assisted Approach for Finding Novel High Activity Agonists of Human Ectopic Olfactory Receptors.

Authors:  Amara Jabeen; Claire A de March; Hiroaki Matsunami; Shoba Ranganathan
Journal:  Int J Mol Sci       Date:  2021-10-26       Impact factor: 5.923

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