Literature DB >> 26044705

G protein-coupled odorant receptors: From sequence to structure.

Claire A de March1, Soo-Kyung Kim2, Serge Antonczak1, William A Goddard2, Jérôme Golebiowski1.   

Abstract

Odorant receptors (ORs) are the largest subfamily within class A G protein-coupled receptors (GPCRs). No experimental structural data of any OR is available to date and atomic-level insights are likely to be obtained by means of molecular modeling. In this article, we critically align sequences of ORs with those GPCRs for which a structure is available. Here, an alignment consistent with available site-directed mutagenesis data on various ORs is proposed. Using this alignment, the choice of the template is deemed rather minor for identifying residues that constitute the wall of the binding cavity or those involved in G protein recognition.
© 2015 The Protein Society.

Keywords:  binding cavity; odorant receptor; olfactory; sequence; structure

Mesh:

Substances:

Year:  2015        PMID: 26044705      PMCID: PMC4570547          DOI: 10.1002/pro.2717

Source DB:  PubMed          Journal:  Protein Sci        ISSN: 0961-8368            Impact factor:   6.725


  23 in total

1.  Prediction of the odorant binding site of olfactory receptor proteins by human-mouse comparisons.

Authors:  Orna Man; Yoav Gilad; Doron Lancet
Journal:  Protein Sci       Date:  2004-01       Impact factor: 6.725

2.  The molecular basis for ligand specificity in a mouse olfactory receptor: a network of functionally important residues.

Authors:  Tatjana Abaffy; Arun Malhotra; Charles W Luetje
Journal:  J Biol Chem       Date:  2006-11-17       Impact factor: 5.157

3.  Structural determinants of odorant recognition by the human olfactory receptors OR1A1 and OR1A2.

Authors:  Kristin Schmiedeberg; Elena Shirokova; Hans-Peter Weber; Boris Schilling; Wolfgang Meyerhof; Dietmar Krautwurst
Journal:  J Struct Biol       Date:  2007-05-25       Impact factor: 2.867

4.  A novel multigene family may encode odorant receptors: a molecular basis for odor recognition.

Authors:  L Buck; R Axel
Journal:  Cell       Date:  1991-04-05       Impact factor: 41.582

5.  Structural basis for a broad but selective ligand spectrum of a mouse olfactory receptor: mapping the odorant-binding site.

Authors:  Sayako Katada; Takatsugu Hirokawa; Yuki Oka; Makiko Suwa; Kazushige Touhara
Journal:  J Neurosci       Date:  2005-02-16       Impact factor: 6.167

6.  Comparative protein structure modeling using Modeller.

Authors:  Ben Webb; Andrej Sali; Narayanan Eswar; Marc A Marti-Renom; M S Madhusudhan; David Eramian; Min-Yi Shen; Ursula Pieper
Journal:  Curr Protoc Bioinformatics       Date:  2006-10

7.  Amino acids involved in conformational dynamics and G protein coupling of an odorant receptor: targeting gain-of-function mutation.

Authors:  Aya Kato; Sayako Katada; Kazushige Touhara
Journal:  J Neurochem       Date:  2008-09-18       Impact factor: 5.372

8.  Identification of ligands for olfactory receptors by functional expression of a receptor library.

Authors:  D Krautwurst; K W Yau; R R Reed
Journal:  Cell       Date:  1998-12-23       Impact factor: 41.582

9.  Jalview Version 2--a multiple sequence alignment editor and analysis workbench.

Authors:  Andrew M Waterhouse; James B Procter; David M A Martin; Michèle Clamp; Geoffrey J Barton
Journal:  Bioinformatics       Date:  2009-01-16       Impact factor: 6.937

10.  Large-scale production and study of a synthetic G protein-coupled receptor: human olfactory receptor 17-4.

Authors:  Brian L Cook; Dirk Steuerwald; Liselotte Kaiser; Johanna Graveland-Bikker; Melanie Vanberghem; Allison P Berke; Kara Herlihy; Horst Pick; Horst Vogel; Shuguang Zhang
Journal:  Proc Natl Acad Sci U S A       Date:  2009-07-06       Impact factor: 11.205

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  25 in total

1.  Responsiveness of G protein-coupled odorant receptors is partially attributed to the activation mechanism.

Authors:  Yiqun Yu; Claire A de March; Mengjue J Ni; Kaylin A Adipietro; Jérôme Golebiowski; Hiroaki Matsunami; Minghong Ma
Journal:  Proc Natl Acad Sci U S A       Date:  2015-11-16       Impact factor: 11.205

Review 2.  Structure-Function Relationships of Olfactory and Taste Receptors.

Authors:  Maik Behrens; Loïc Briand; Claire A de March; Hiroaki Matsunami; Atsuko Yamashita; Wolfgang Meyerhof; Simone Weyand
Journal:  Chem Senses       Date:  2018-02-02       Impact factor: 3.160

3.  Odorant Receptor 7D4 Activation Dynamics.

Authors:  Claire A de March; Jérémie Topin; Elise Bruguera; Gleb Novikov; Kentaro Ikegami; Hiroaki Matsunami; Jérôme Golebiowski
Journal:  Angew Chem Int Ed Engl       Date:  2018-03-24       Impact factor: 15.336

4.  Structural determinants of a conserved enantiomer-selective carvone binding pocket in the human odorant receptor OR1A1.

Authors:  Christiane Geithe; Jonas Protze; Franziska Kreuchwig; Gerd Krause; Dietmar Krautwurst
Journal:  Cell Mol Life Sci       Date:  2017-06-27       Impact factor: 9.261

5.  Real-time In Vitro Monitoring of Odorant Receptor Activation by an Odorant in the Vapor Phase.

Authors:  Claire A de March; Yosuke Fukutani; Aashutosh Vihani; Hitoshi Kida; Hiroaki Matsunami
Journal:  J Vis Exp       Date:  2019-04-23       Impact factor: 1.355

Review 6.  Cation-π Interactions and their Functional Roles in Membrane Proteins.

Authors:  Daniel T Infield; Ali Rasouli; Grace D Galles; Christophe Chipot; Emad Tajkhorshid; Christopher A Ahern
Journal:  J Mol Biol       Date:  2021-05-04       Impact factor: 5.469

Review 7.  Gas sensors based on mass-sensitive transducers. Part 2: Improving the sensors towards practical application.

Authors:  Alexandru Oprea; Udo Weimar
Journal:  Anal Bioanal Chem       Date:  2020-07-31       Impact factor: 4.142

8.  Structural instability and divergence from conserved residues underlie intracellular retention of mammalian odorant receptors.

Authors:  Kentaro Ikegami; Claire A de March; Maira H Nagai; Soumadwip Ghosh; Matthew Do; Ruchira Sharma; Elise S Bruguera; Yueyang Eric Lu; Yosuke Fukutani; Nagarajan Vaidehi; Masafumi Yohda; Hiroaki Matsunami
Journal:  Proc Natl Acad Sci U S A       Date:  2020-01-23       Impact factor: 11.205

9.  Agonists of G-Protein-Coupled Odorant Receptors Are Predicted from Chemical Features.

Authors:  C Bushdid; C A de March; S Fiorucci; H Matsunami; J Golebiowski
Journal:  J Phys Chem Lett       Date:  2018-04-17       Impact factor: 6.475

10.  Mammalian class I odorant receptors exhibit a conserved vestibular-binding pocket.

Authors:  Caroline Bushdid; Claire A de March; Jérémie Topin; Matthew Do; Hiroaki Matsunami; Jérôme Golebiowski
Journal:  Cell Mol Life Sci       Date:  2019-01-01       Impact factor: 9.261

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