Literature DB >> 31973951

Biogenesis and Functions of Circular RNAs Come into Focus.

Mei-Sheng Xiao1, Yuxi Ai2, Jeremy E Wilusz3.   

Abstract

Many eukaryotic protein-coding genes are able to generate exonic circular RNAs. Most of these covalently linked transcripts are expressed at low levels, but some accumulate to higher levels than their associated linear mRNAs. We highlight several methodologies that have been developed in recent years to identify and characterize these transcripts, and which have revealed an increasingly detailed view of how circular RNAs can be generated and function. It is now clear that modulation of circular RNA levels can result in a variety of molecular and physiological phenotypes, including effects on the nervous system, innate immunity, microRNAs, and many disease-relevant pathways.
Copyright © 2019 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  backsplicing; circRNA; innate immunity; microRNA; pre-mRNA splicing; translation

Mesh:

Substances:

Year:  2020        PMID: 31973951      PMCID: PMC7069689          DOI: 10.1016/j.tcb.2019.12.004

Source DB:  PubMed          Journal:  Trends Cell Biol        ISSN: 0962-8924            Impact factor:   20.808


  118 in total

1.  Group I permuted intron-exon (PIE) sequences self-splice to produce circular exons.

Authors:  M Puttaraju; M D Been
Journal:  Nucleic Acids Res       Date:  1992-10-25       Impact factor: 16.971

2.  Analysis of intron sequences reveals hallmarks of circular RNA biogenesis in animals.

Authors:  Andranik Ivanov; Sebastian Memczak; Emanuel Wyler; Francesca Torti; Hagit T Porath; Marta R Orejuela; Michael Piechotta; Erez Y Levanon; Markus Landthaler; Christoph Dieterich; Nikolaus Rajewsky
Journal:  Cell Rep       Date:  2014-12-31       Impact factor: 9.423

3.  Exon-intron circular RNAs regulate transcription in the nucleus.

Authors:  Zhaoyong Li; Chuan Huang; Chun Bao; Liang Chen; Mei Lin; Xiaolin Wang; Guolin Zhong; Bin Yu; Wanchen Hu; Limin Dai; Pengfei Zhu; Zhaoxia Chang; Qingfa Wu; Yi Zhao; Ya Jia; Ping Xu; Huijie Liu; Ge Shan
Journal:  Nat Struct Mol Biol       Date:  2015-02-09       Impact factor: 15.369

4.  Increased complexity of circRNA expression during species evolution.

Authors:  Rui Dong; Xu-Kai Ma; Ling-Ling Chen; Li Yang
Journal:  RNA Biol       Date:  2016-12-16       Impact factor: 4.652

5.  circRNA biogenesis competes with pre-mRNA splicing.

Authors:  Reut Ashwal-Fluss; Markus Meyer; Nagarjuna Reddy Pamudurti; Andranik Ivanov; Osnat Bartok; Mor Hanan; Naveh Evantal; Sebastian Memczak; Nikolaus Rajewsky; Sebastian Kadener
Journal:  Mol Cell       Date:  2014-09-18       Impact factor: 17.970

Review 6.  Dynamic integration of splicing within gene regulatory pathways.

Authors:  Ulrich Braunschweig; Serge Gueroussov; Alex M Plocik; Brenton R Graveley; Benjamin J Blencowe
Journal:  Cell       Date:  2013-03-14       Impact factor: 41.582

7.  The Landscape of Circular RNA in Cancer.

Authors:  Josh N Vo; Marcin Cieslik; Yajia Zhang; Sudhanshu Shukla; Lanbo Xiao; Yuping Zhang; Yi-Mi Wu; Saravana M Dhanasekaran; Carl G Engelke; Xuhong Cao; Dan R Robinson; Alexey I Nesvizhskii; Arul M Chinnaiyan
Journal:  Cell       Date:  2019-02-07       Impact factor: 41.582

8.  Long and Repeat-Rich Intronic Sequences Favor Circular RNA Formation under Conditions of Reduced Spliceosome Activity.

Authors:  Mantian Wang; Jingyi Hou; Michaela Müller-McNicoll; Wei Chen; Erin M Schuman
Journal:  iScience       Date:  2019-09-06

9.  A length-dependent evolutionarily conserved pathway controls nuclear export of circular RNAs.

Authors:  Chuan Huang; Dongming Liang; Deirdre C Tatomer; Jeremy E Wilusz
Journal:  Genes Dev       Date:  2018-05-17       Impact factor: 11.361

10.  Proper splicing contributes to visual function in the aging Drosophila eye.

Authors:  Rachel Stegeman; Hana Hall; Spencer E Escobedo; Henry C Chang; Vikki M Weake
Journal:  Aging Cell       Date:  2018-07-12       Impact factor: 9.304

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  69 in total

1.  Read-through circular RNAs reveal the plasticity of RNA processing mechanisms in human cells.

Authors:  Amanda F Vidal
Journal:  RNA Biol       Date:  2020-08-12       Impact factor: 4.652

2.  Use of circular RNAs as markers of readthrough transcription to identify factors regulating cleavage/polyadenylation events.

Authors:  Dongming Liang; Deirdre C Tatomer; Jeremy E Wilusz
Journal:  Methods       Date:  2021-04-18       Impact factor: 3.608

Review 3.  Best practices to ensure robust investigation of circular RNAs: pitfalls and tips.

Authors:  Samantha Dodbele; Nebibe Mutlu; Jeremy E Wilusz
Journal:  EMBO Rep       Date:  2021-02-25       Impact factor: 8.807

Review 4.  New progresses of circular RNA biology: from nuclear export to degradation.

Authors:  Min Zhou; Mei-Sheng Xiao; Zhengguo Li; Chuan Huang
Journal:  RNA Biol       Date:  2020-12-09       Impact factor: 4.652

Review 5.  RNA in cancer.

Authors:  Gregory J Goodall; Vihandha O Wickramasinghe
Journal:  Nat Rev Cancer       Date:  2020-10-20       Impact factor: 60.716

6.  CircUbe3a from M2 macrophage-derived small extracellular vesicles mediates myocardial fibrosis after acute myocardial infarction.

Authors:  Yan Wang; Chaofu Li; Ranzun Zhao; Zhimei Qiu; Changyin Shen; Zhenglong Wang; Weiwei Liu; Wei Zhang; Junbo Ge; Bei Shi
Journal:  Theranostics       Date:  2021-04-15       Impact factor: 11.556

Review 7.  Urinary extracellular vesicles: a rising star in bladder cancer management.

Authors:  Fumihiko Urabe; Takahiro Kimura; Kagenori Ito; Yusuke Yamamoto; Shunsuke Tsuzuki; Jun Miki; Takahiro Ochiya; Shin Egawa
Journal:  Transl Androl Urol       Date:  2021-04

Review 8.  Squaring the circle: circRNAs in melanoma.

Authors:  Nicol Mecozzi; Olga Vera; Florian A Karreth
Journal:  Oncogene       Date:  2021-07-30       Impact factor: 9.867

9.  Comparative Analysis of the Circular Transcriptome in Muscle, Liver, and Testis in Three Livestock Species.

Authors:  Annie Robic; Chloé Cerutti; Christa Kühn; Thomas Faraut
Journal:  Front Genet       Date:  2021-05-10       Impact factor: 4.599

Review 10.  Elucidating the Functions of Non-Coding RNAs from the Perspective of RNA Modifications.

Authors:  Venkata Naga Srikanth Garikipati; Shizuka Uchida
Journal:  Noncoding RNA       Date:  2021-05-11
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