Literature DB >> 32783578

Read-through circular RNAs reveal the plasticity of RNA processing mechanisms in human cells.

Amanda F Vidal1,2.   

Abstract

In the human genome, there are several genes whose primary transcripts are both canonically and non-canonically spliced to generate mRNAs and RNA circles, respectively. These RNA circles are a novel class of long non-coding RNAs that became known as circular RNAs (circRNAs). Recently, a new type of circRNA was discovered and called read-through circRNAs (rt-circRNAs). They are hybrid circles that include coding exons from two adjacent and similarly oriented genes. The function of rt-circRNAs, as well as the impact of read-through transcription in our transcriptome, remains to be elucidated. Although we have just begun to scratch it, here I discussed some insights that these fascinating circRNAs are already giving us about the plasticity of RNA processing in our cells.

Entities:  

Keywords:  Non-coding RNAs; RNA processing; circular RNAs; read-through transcription; transcriptome

Year:  2020        PMID: 32783578      PMCID: PMC7714478          DOI: 10.1080/15476286.2020.1805233

Source DB:  PubMed          Journal:  RNA Biol        ISSN: 1547-6286            Impact factor:   4.652


  18 in total

1.  Transcription-mediated gene fusion in the human genome.

Authors:  Pinchas Akiva; Amir Toporik; Sarit Edelheit; Yifat Peretz; Alex Diber; Ronen Shemesh; Amit Novik; Rotem Sorek
Journal:  Genome Res       Date:  2005-12-12       Impact factor: 9.043

2.  Identification of cancer driver genes based on nucleotide context.

Authors:  Felix Dietlein; Donate Weghorn; Amaro Taylor-Weiner; André Richters; Brendan Reardon; David Liu; Eric S Lander; Eliezer M Van Allen; Shamil R Sunyaev
Journal:  Nat Genet       Date:  2020-02-03       Impact factor: 38.330

Review 3.  Biogenesis and Functions of Circular RNAs Come into Focus.

Authors:  Mei-Sheng Xiao; Yuxi Ai; Jeremy E Wilusz
Journal:  Trends Cell Biol       Date:  2020-01-20       Impact factor: 20.808

4.  The Landscape of Circular RNA in Cancer.

Authors:  Josh N Vo; Marcin Cieslik; Yajia Zhang; Sudhanshu Shukla; Lanbo Xiao; Yuping Zhang; Yi-Mi Wu; Saravana M Dhanasekaran; Carl G Engelke; Xuhong Cao; Dan R Robinson; Alexey I Nesvizhskii; Arul M Chinnaiyan
Journal:  Cell       Date:  2019-02-07       Impact factor: 41.582

5.  Recurrent read-through fusion transcripts in breast cancer.

Authors:  Katherine E Varley; Jason Gertz; Brian S Roberts; Nicholas S Davis; Kevin M Bowling; Marie K Kirby; Amy S Nesmith; Patsy G Oliver; William E Grizzle; Andres Forero; Donald J Buchsbaum; Albert F LoBuglio; Richard M Myers
Journal:  Breast Cancer Res Treat       Date:  2014-06-15       Impact factor: 4.872

6.  Read-through transcripts in normal human lung parenchyma are down-regulated in lung adenocarcinoma.

Authors:  Giulia Pintarelli; Alice Dassano; Chiara E Cotroneo; Antonella Galvan; Sara Noci; Rocco Piazza; Alessandra Pirola; Roberta Spinelli; Matteo Incarbone; Alessandro Palleschi; Lorenzo Rosso; Luigi Santambrogio; Tommaso A Dragani; Francesca Colombo
Journal:  Oncotarget       Date:  2016-05-10

Review 7.  Circular RNAs-The Road Less Traveled.

Authors:  Ashirbad Guria; Priyanka Sharma; Sankar Natesan; Gopal Pandi
Journal:  Front Mol Biosci       Date:  2020-01-10

8.  Chimeras taking shape: potential functions of proteins encoded by chimeric RNA transcripts.

Authors:  Milana Frenkel-Morgenstern; Vincent Lacroix; Iakes Ezkurdia; Yishai Levin; Alexandra Gabashvili; Jaime Prilusky; Angela Del Pozo; Michael Tress; Rory Johnson; Roderic Guigo; Alfonso Valencia
Journal:  Genome Res       Date:  2012-05-15       Impact factor: 9.043

9.  Pervasive transcription read-through promotes aberrant expression of oncogenes and RNA chimeras in renal carcinoma.

Authors:  Ana R Grosso; Ana P Leite; Sílvia Carvalho; Mafalda R Matos; Filipa B Martins; Alexandra C Vítor; Joana M P Desterro; Maria Carmo-Fonseca; Sérgio F de Almeida
Journal:  Elife       Date:  2015-11-17       Impact factor: 8.140

10.  Circle the Wagons: Circular RNAs Control Innate Immunity.

Authors:  Jeremy E Wilusz
Journal:  Cell       Date:  2019-05-02       Impact factor: 41.582

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  4 in total

Review 1.  Expanding uncapped translation and emerging function of circular RNA in carcinomas and noncarcinomas.

Authors:  Yan Wang; Chunjie Wu; Yu Du; Zhongwei Li; Minle Li; Pingfu Hou; Zhigang Shen; Sufang Chu; Junnian Zheng; Jin Bai
Journal:  Mol Cancer       Date:  2022-01-07       Impact factor: 27.401

Review 2.  Comprehensive elaboration of circular RNA in multiple myeloma.

Authors:  Chunsheng Zhu; Aoxiang Guo; Bao Sun; Zheng Zhou
Journal:  Front Pharmacol       Date:  2022-08-29       Impact factor: 5.988

Review 3.  Circular RNAs' cap-independent translation protein and its roles in carcinomas.

Authors:  Lian He; Changfeng Man; Shouyan Xiang; Lin Yao; Xiaoyan Wang; Yu Fan
Journal:  Mol Cancer       Date:  2021-09-15       Impact factor: 27.401

Review 4.  Circular RNA-Is the Circle Perfect?

Authors:  Lavinia Caba; Laura Florea; Cristina Gug; Daniela Cristina Dimitriu; Eusebiu Vlad Gorduza
Journal:  Biomolecules       Date:  2021-11-24
  4 in total

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