Literature DB >> 32896783

Tailoring NMR experiments for structural characterization of amorphous biological solids: A practical guide.

John E Kelly1, Christine Chrissian2, Ruth E Stark3.   

Abstract

Many interesting solid-state targets for biological research do not form crystalline structures; these materials include intrinsically disordered proteins, plant biopolymer composites, cell-wall polysaccharides, and soil organic matter. The absence of aligned repeating structural elements and atomic-level rigidity presents hurdles to achieving structural elucidation and obtaining functional insights. We describe strategies for adapting several solid-state NMR methods to determine the molecular structures and compositions of these amorphous biosolids. The main spectroscopic problems in studying amorphous structures by NMR are over/under-sampling of the spin signals and spectral complexity. These problems arise in part because amorphous biosolids typically contain a mix of rigid and mobile domains, making it difficult to select a single experiment or set of acquisition conditions that fairly represents all nuclear spins in a carbon-based organic sample. These issues can be addressed by running hybrid experiments, such as using direct excitation alongside cross polarization-based methods, to develop a more holistic picture of the macromolecular system. In situations of spectral crowding or overlap, the structural elucidation strategy can be further assisted by coupling 13C spins to nuclei such as 15N, filtering out portions of the spectrum, highlighting individual moieties of interest, and adding a second or third spectral dimension to an NMR experiment in order to spread out the resonances and link them pairwise through space or through bonds. We discuss practical aspects and illustrations from the recent literature for 1D experiments that use cross or direct polarization and both homo- and heteronuclear 2D and 3D solid-state NMR experiments.
Copyright © 2020 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Amorphous biosolids; Biopolymer; Correlation spectroscopy; Magic angle spinning; Solid-state NMR

Mesh:

Substances:

Year:  2020        PMID: 32896783      PMCID: PMC7530138          DOI: 10.1016/j.ssnmr.2020.101686

Source DB:  PubMed          Journal:  Solid State Nucl Magn Reson        ISSN: 0926-2040            Impact factor:   2.293


  38 in total

1.  Kinetics of cross-polarization in solid-state NMR: a guide for chemists.

Authors:  Waclaw Kolodziejski; Jacek Klinowski
Journal:  Chem Rev       Date:  2002-03       Impact factor: 60.622

2.  Quantitative solid-state 13C NMR with signal enhancement by multiple cross polarization.

Authors:  Robert L Johnson; Klaus Schmidt-Rohr
Journal:  J Magn Reson       Date:  2013-11-27       Impact factor: 2.229

3.  The melanization road more traveled by: Precursor substrate effects on melanin synthesis in cell-free and fungal cell systems.

Authors:  Subhasish Chatterjee; Rafael Prados-Rosales; Sindy Tan; Van Chanh Phan; Christine Chrissian; Boris Itin; Hsin Wang; Abdelahad Khajo; Richard S Magliozzo; Arturo Casadevall; Ruth E Stark
Journal:  J Biol Chem       Date:  2018-11-01       Impact factor: 5.157

4.  Comprehensive MS and Solid-State NMR Metabolomic Profiling Reveals Molecular Variations in Native Periderms from Four Solanum tuberosum Potato Cultivars.

Authors:  Wenlin Huang; Olga Serra; Keyvan Dastmalchi; Liqing Jin; Lijia Yang; Ruth E Stark
Journal:  J Agric Food Chem       Date:  2017-03-02       Impact factor: 5.279

Review 5.  Solid-state NMR of plant and fungal cell walls: A critical review.

Authors:  Wancheng Zhao; Liyanage D Fernando; Alex Kirui; Fabien Deligey; Tuo Wang
Journal:  Solid State Nucl Magn Reson       Date:  2020-03-26       Impact factor: 2.293

Review 6.  Structure and Dynamics of Membrane Proteins from Solid-State NMR.

Authors:  Venkata S Mandala; Jonathan K Williams; Mei Hong
Journal:  Annu Rev Biophys       Date:  2018-03-02       Impact factor: 12.981

7.  Analysis of the Aspergillus fumigatus Biofilm Extracellular Matrix by Solid-State Nuclear Magnetic Resonance Spectroscopy.

Authors:  Courtney Reichhardt; Jose A G Ferreira; Lydia-Marie Joubert; Karl V Clemons; David A Stevens; Lynette Cegelski
Journal:  Eukaryot Cell       Date:  2015-07-10

8.  Defensive Armor of Potato Tubers: Nonpolar Metabolite Profiling, Antioxidant Assessment, and Solid-State NMR Compositional Analysis of Suberin-Enriched Wound-Healing Tissues.

Authors:  Keyvan Dastmalchi; Linda Kallash; Isabel Wang; Van C Phan; Wenlin Huang; Olga Serra; Ruth E Stark
Journal:  J Agric Food Chem       Date:  2015-07-24       Impact factor: 5.279

9.  Characterization of the Vibrio cholerae extracellular matrix: a top-down solid-state NMR approach.

Authors:  Courtney Reichhardt; Jiunn C N Fong; Fitnat Yildiz; Lynette Cegelski
Journal:  Biochim Biophys Acta       Date:  2014-06-07

10.  Molecular architecture of fungal cell walls revealed by solid-state NMR.

Authors:  Xue Kang; Alex Kirui; Artur Muszyński; Malitha C Dickwella Widanage; Adrian Chen; Parastoo Azadi; Ping Wang; Frederic Mentink-Vigier; Tuo Wang
Journal:  Nat Commun       Date:  2018-07-16       Impact factor: 14.919

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  4 in total

Review 1.  Solid-State NMR Investigations of Extracellular Matrixes and Cell Walls of Algae, Bacteria, Fungi, and Plants.

Authors:  Nader Ghassemi; Alexandre Poulhazan; Fabien Deligey; Frederic Mentink-Vigier; Isabelle Marcotte; Tuo Wang
Journal:  Chem Rev       Date:  2021-12-08       Impact factor: 72.087

2.  Identification of a Novel Pyruvyltransferase Using 13C Solid-State Nuclear Magnetic Resonance To Analyze Rhizobial Exopolysaccharides.

Authors:  Derek H Wells; Nicolette F Goularte; Melanie J Barnett; Lynette Cegelski; Sharon R Long
Journal:  J Bacteriol       Date:  2021-10-04       Impact factor: 3.490

3.  Unconventional Constituents and Shared Molecular Architecture of the Melanized Cell Wall of C. neoformans and Spore Wall of S. cerevisiae.

Authors:  Christine Chrissian; Coney Pei-Chen Lin; Emma Camacho; Arturo Casadevall; Aaron M Neiman; Ruth E Stark
Journal:  J Fungi (Basel)       Date:  2020-12-01

4.  Identification and Quantification of Glycans in Whole Cells: Architecture of Microalgal Polysaccharides Described by Solid-State Nuclear Magnetic Resonance.

Authors:  Alexandre Poulhazan; Malitha C Dickwella Widanage; Artur Muszyński; Alexandre A Arnold; Dror E Warschawski; Parastoo Azadi; Isabelle Marcotte; Tuo Wang
Journal:  J Am Chem Soc       Date:  2021-11-04       Impact factor: 15.419

  4 in total

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