Literature DB >> 31965999

TET methylcytosine oxidases: new insights from a decade of research.

Chan-Wang J Lio1, Xiaojing Yue, Isaac F Lopez-Moyado, Mamta Tahiliani, L Aravind, Anjana Rao.   

Abstract

In mammals, DNA methyltransferases transfer a methyl group from S-adenosylmethionine to the 5 position of cytosine in DNA. The product of this reaction, 5-methylcytosine (5mC), has many roles, particularly in suppressing transposable and repeat elements in DNA. Moreover, in many cellular systems, cell lineage specification is accompanied by DNA demethylation at the promoters of genes expressed at high levels in the differentiated cells. However, since direct cleavage of the C-C bond connecting the methyl group to the 5 position of cytosine is thermodynamically disfavoured, the question of whether DNA methylation was reversible remained unclear for many decades. This puzzle was solved by our discovery of the TET (Ten- Eleven Translocation) family of 5-methylcytosine oxidases, which use reduced iron, molecular oxygen and the tricarboxylic acid cycle metabolite 2-oxoglutarate (also known as a-ketoglutarate) to oxidise the methyl group of 5mC to 5-hydroxymethylcytosine (5hmC) and beyond. TET-generated oxidised methylcytosines are intermediates in at least two pathways of DNA demethylation, which differ in their dependence on DNA replication. In the decade since their discovery, TET enzymes have been shown to have important roles in embryonic development, cell lineage specification, neuronal function and cancer. We review these findings and discuss their implications here.

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Year:  2020        PMID: 31965999      PMCID: PMC7216820     

Source DB:  PubMed          Journal:  J Biosci        ISSN: 0250-5991            Impact factor:   1.826


  101 in total

1.  TET2 and DNMT3A mutations in human T-cell lymphoma.

Authors:  Lucile Couronné; Christian Bastard; Olivier A Bernard
Journal:  N Engl J Med       Date:  2012-01-05       Impact factor: 91.245

2.  Mechanism and stem-cell activity of 5-carboxycytosine decarboxylation determined by isotope tracing.

Authors:  Stefan Schiesser; Benjamin Hackner; Toni Pfaffeneder; Markus Müller; Christian Hagemeier; Matthias Truss; Thomas Carell
Journal:  Angew Chem Int Ed Engl       Date:  2012-05-29       Impact factor: 15.336

3.  Loss of maintenance DNA methylation results in abnormal DNA origin firing during DNA replication.

Authors:  Mayumi Haruta; Midori Shimada; Atsuya Nishiyama; Yoshikazu Johmura; Benoît Le Tallec; Michelle Debatisse; Makoto Nakanishi
Journal:  Biochem Biophys Res Commun       Date:  2015-12-22       Impact factor: 3.575

4.  Chromatin organization is a major influence on regional mutation rates in human cancer cells.

Authors:  Benjamin Schuster-Böckler; Ben Lehner
Journal:  Nature       Date:  2012-08-23       Impact factor: 49.962

Review 5.  Lamina-Associated Domains: Links with Chromosome Architecture, Heterochromatin, and Gene Repression.

Authors:  Bas van Steensel; Andrew S Belmont
Journal:  Cell       Date:  2017-05-18       Impact factor: 41.582

Review 6.  The fundamental role of epigenetic events in cancer.

Authors:  Peter A Jones; Stephen B Baylin
Journal:  Nat Rev Genet       Date:  2002-06       Impact factor: 53.242

Review 7.  Regulatory T cells: mechanisms of differentiation and function.

Authors:  Steven Z Josefowicz; Li-Fan Lu; Alexander Y Rudensky
Journal:  Annu Rev Immunol       Date:  2012-01-06       Impact factor: 28.527

8.  Comprehensive mapping of long-range interactions reveals folding principles of the human genome.

Authors:  Erez Lieberman-Aiden; Nynke L van Berkum; Louise Williams; Maxim Imakaev; Tobias Ragoczy; Agnes Telling; Ido Amit; Bryan R Lajoie; Peter J Sabo; Michael O Dorschner; Richard Sandstrom; Bradley Bernstein; M A Bender; Mark Groudine; Andreas Gnirke; John Stamatoyannopoulos; Leonid A Mirny; Eric S Lander; Job Dekker
Journal:  Science       Date:  2009-10-09       Impact factor: 47.728

9.  Distinct roles of the methylcytosine oxidases Tet1 and Tet2 in mouse embryonic stem cells.

Authors:  Yun Huang; Lukas Chavez; Xing Chang; Xue Wang; William A Pastor; Jinsuk Kang; Jorge A Zepeda-Martínez; Utz J Pape; Steven E Jacobsen; Bjoern Peters; Anjana Rao
Journal:  Proc Natl Acad Sci U S A       Date:  2014-01-13       Impact factor: 11.205

10.  The DNA-repair protein AlkB, EGL-9, and leprecan define new families of 2-oxoglutarate- and iron-dependent dioxygenases.

Authors:  L Aravind; E V Koonin
Journal:  Genome Biol       Date:  2001-02-19       Impact factor: 13.583

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  19 in total

1.  Epigenetic remodeling by vitamin C potentiates plasma cell differentiation.

Authors:  Heng-Yi Chen; Ana Almonte-Loya; Fang-Yun Lay; Michael Hsu; Eric Johnson; Edahí González-Avalos; Jieyun Yin; Richard S Bruno; Qin Ma; Hazem E Ghoneim; Daniel J Wozniak; Fiona E Harrison; Chan-Wang Jerry Lio
Journal:  Elife       Date:  2022-09-07       Impact factor: 8.713

2.  Acute deletion of TET enzymes results in aneuploidy in mouse embryonic stem cells through decreased expression of Khdc3.

Authors:  Romain O Georges; Hugo Sepulveda; J Carlos Angel; Eric Johnson; Susan Palomino; Roberta B Nowak; Arshad Desai; Isaac F López-Moyado; Anjana Rao
Journal:  Nat Commun       Date:  2022-10-20       Impact factor: 17.694

Review 3.  Pioneer factors as master regulators of the epigenome and cell fate.

Authors:  Aurelio Balsalobre; Jacques Drouin
Journal:  Nat Rev Mol Cell Biol       Date:  2022-03-09       Impact factor: 113.915

Review 4.  The threat of programmed DNA damage to neuronal genome integrity and plasticity.

Authors:  Keith W Caldecott; Michael E Ward; André Nussenzweig
Journal:  Nat Genet       Date:  2022-02-10       Impact factor: 41.307

5.  TET family dioxygenases and the TET activator vitamin C in immune responses and cancer.

Authors:  Xiaojing Yue; Anjana Rao
Journal:  Blood       Date:  2020-09-17       Impact factor: 22.113

Review 6.  Circles of Life: linking metabolic and epigenetic cycles to immunity.

Authors:  Chan-Wang Jerry Lio; Stanley Ching-Cheng Huang
Journal:  Immunology       Date:  2020-06-03       Impact factor: 7.397

7.  Neuronal enhancers are hotspots for DNA single-strand break repair.

Authors:  Wei Wu; Sarah E Hill; William J Nathan; Jacob Paiano; Elsa Callen; Dongpeng Wang; Kenta Shinoda; Niek van Wietmarschen; Jennifer M Colón-Mercado; Dali Zong; Raffaella De Pace; Han-Yu Shih; Steve Coon; Maia Parsadanian; Raphael Pavani; Hana Hanzlikova; Solji Park; Seol Kyoung Jung; Peter J McHugh; Andres Canela; Chongyi Chen; Rafael Casellas; Keith W Caldecott; Michael E Ward; André Nussenzweig
Journal:  Nature       Date:  2021-03-25       Impact factor: 49.962

Review 8.  Epigenetics of addiction.

Authors:  Jean Lud Cadet; Subramaniam Jayanthi
Journal:  Neurochem Int       Date:  2021-05-13       Impact factor: 4.297

Review 9.  Genome-Protecting Compounds as Potential Geroprotectors.

Authors:  Ekaterina Proshkina; Mikhail Shaposhnikov; Alexey Moskalev
Journal:  Int J Mol Sci       Date:  2020-06-24       Impact factor: 5.923

10.  Scientific divagations: from signaling and transcription to chromatin changes in T cells.

Authors:  Anjana Rao
Journal:  Nat Immunol       Date:  2020-12       Impact factor: 25.606

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