Literature DB >> 32300761

High-resolution probing of early events in amyloid-β aggregation related to Alzheimer's disease.

Bikash R Sahoo1, Sarah J Cox, Ayyalusamy Ramamoorthy.   

Abstract

In Alzheimer's disease (AD), soluble oligomers of amyloid-β (Aβ) are emerging as a crucial entity in driving disease progression as compared to insoluble amyloid deposits. The lacuna in establishing the structure to function relationship for Aβ oligomers prevents the development of an effective treatment for AD. While the transient and heterogeneous properties of Aβ oligomers impose many challenges for structural investigation, an effective use of a combination of NMR techniques has successfully identified and characterized them at atomic-resolution. Here, we review the successful utilization of solution and solid-state NMR techniques to probe the aggregation and structures of small and large oligomers of Aβ. Biophysical studies utilizing the commonly used solution and 19F based NMR experiments to identify the formation of small size early intermediates and to obtain their structures, and dock-lock mechanism of fiber growth at atomic-resolution are discussed. In addition, the use of proton-detected magic angle spinning (MAS) solid-state NMR experiments to obtain high-resolution insights into the aggregation pathways and structures of large oligomers and other aggregates is also presented. We expect these NMR based studies to be valuable for real-time monitoring of the depletion of monomers and the formation of toxic oligomers and high-order aggregates under a variety of conditions, and to solve the high-resolution structures of small and large size oligomers for most amyloid proteins, and therefore to develop inhibitors and drugs.

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Year:  2020        PMID: 32300761      PMCID: PMC7254607          DOI: 10.1039/d0cc01551b

Source DB:  PubMed          Journal:  Chem Commun (Camb)        ISSN: 1359-7345            Impact factor:   6.222


  125 in total

1.  Molecular dynamics simulation of amyloid beta dimer formation.

Authors:  B Urbanc; L Cruz; F Ding; D Sammond; S Khare; S V Buldyrev; H E Stanley; N V Dokholyan
Journal:  Biophys J       Date:  2004-10       Impact factor: 4.033

2.  Zinc ions promote Alzheimer Abeta aggregation via population shift of polymorphic states.

Authors:  Yifat Miller; Buyong Ma; Ruth Nussinov
Journal:  Proc Natl Acad Sci U S A       Date:  2010-05-06       Impact factor: 11.205

3.  Amyloid beta(1-42) in aqueous environments: effects of ionic strength and E22Q (Dutch) mutation.

Authors:  Fabrizio Bossis; Luigi L Palese
Journal:  Biochim Biophys Acta       Date:  2013-09-06

4.  Atomic Resolution Structure of Monomorphic Aβ42 Amyloid Fibrils.

Authors:  Michael T Colvin; Robert Silvers; Qing Zhe Ni; Thach V Can; Ivan Sergeyev; Melanie Rosay; Kevin J Donovan; Brian Michael; Joseph Wall; Sara Linse; Robert G Griffin
Journal:  J Am Chem Soc       Date:  2016-07-14       Impact factor: 15.419

5.  A strategy for designing inhibitors of beta-amyloid toxicity.

Authors:  J Ghanta; C L Shen; L L Kiessling; R M Murphy
Journal:  J Biol Chem       Date:  1996-11-22       Impact factor: 5.157

6.  Structural differences between amyloid beta oligomers.

Authors:  Leonid Breydo; Dmitry Kurouski; Suhail Rasool; Saskia Milton; Jessica W Wu; Vladimir N Uversky; Igor K Lednev; Charles G Glabe
Journal:  Biochem Biophys Res Commun       Date:  2016-06-27       Impact factor: 3.575

7.  Atomic-resolution dynamics on the surface of amyloid-β protofibrils probed by solution NMR.

Authors:  Nicolas L Fawzi; Jinfa Ying; Rodolfo Ghirlando; Dennis A Torchia; G Marius Clore
Journal:  Nature       Date:  2011-10-30       Impact factor: 49.962

8.  Amyloid β-peptides 1-40 and 1-42 form oligomers with mixed β-sheets.

Authors:  Maurizio Baldassarre; Cesare M Baronio; Ludmilla A Morozova-Roche; Andreas Barth
Journal:  Chem Sci       Date:  2017-10-12       Impact factor: 9.825

9.  Nanoscale structure of amyloid-β plaques in Alzheimer's disease.

Authors:  Marta Querol-Vilaseca; Martí Colom-Cadena; Jordi Pegueroles; Raúl Nuñez-Llaves; Joan Luque-Cabecerans; Laia Muñoz-Llahuna; Jordi Andilla; Olivia Belbin; Tara L Spires-Jones; Ellen Gelpi; Jordi Clarimon; Pablo Loza-Alvarez; Juan Fortea; Alberto Lleó
Journal:  Sci Rep       Date:  2019-03-26       Impact factor: 4.379

10.  ApoE-fragment/Aβ heteromers in the brain of patients with Alzheimer's disease.

Authors:  Amandine Mouchard; Marie-Charlotte Boutonnet; Claire Mazzocco; Nathalie Biendon; Nathalie Macrez
Journal:  Sci Rep       Date:  2019-03-08       Impact factor: 4.379

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  17 in total

1.  Macrocyclic Peptides Derived from Familial Alzheimer's Disease Mutants Show Charge-Dependent Oligomeric Assembly and Toxicity.

Authors:  William J Howitz; Gretchen Guaglianone; Kate J McKnelly; Katelyn Haduong; Shareen N Ashby; Mohamed Laayouni; James S Nowick
Journal:  ACS Chem Neurosci       Date:  2022-02-22       Impact factor: 5.780

Review 2.  Dynamic protein structures in normal function and pathologic misfolding in systemic amyloidosis.

Authors:  Emily Lewkowicz; Olga Gursky
Journal:  Biophys Chem       Date:  2021-10-14       Impact factor: 3.628

3.  Gallium nanoparticles as novel inhibitors of Aβ40 aggregation.

Authors:  Kyabeth M Torres; Ambar S Delgado; Erika R Serrano; Nitza V Falcón-Cruz; Anamaris Meléndez; Idalia Ramos; Deguo Du; Rolando Oyola
Journal:  Mater Adv       Date:  2021-07-09

4.  Time-Dependent Lipid Dynamics, Organization and Peptide-Lipid Interaction in Phospholipid Bilayers with Incorporated β-Amyloid Oligomers.

Authors:  Wei Qiang; Katelynne E Doherty; Lukas M Klees; Yuto Tobin-Miyaji
Journal:  J Phys Chem Lett       Date:  2020-09-18       Impact factor: 6.475

5.  Noncanonical protein kinase A activation by oligomerization of regulatory subunits as revealed by inherited Carney complex mutations.

Authors:  Naeimeh Jafari; Jason Del Rio; Madoka Akimoto; Jung Ah Byun; Stephen Boulton; Kody Moleschi; Yousif Alsayyed; Pascale Swanson; Jinfeng Huang; Karla Martinez Pomier; Chi Lee; Jian Wu; Susan S Taylor; Giuseppe Melacini
Journal:  Proc Natl Acad Sci U S A       Date:  2021-05-25       Impact factor: 11.205

Review 6.  Amyloid Oligomers: A Joint Experimental/Computational Perspective on Alzheimer's Disease, Parkinson's Disease, Type II Diabetes, and Amyotrophic Lateral Sclerosis.

Authors:  Phuong H Nguyen; Ayyalusamy Ramamoorthy; Bikash R Sahoo; Jie Zheng; Peter Faller; John E Straub; Laura Dominguez; Joan-Emma Shea; Nikolay V Dokholyan; Alfonso De Simone; Buyong Ma; Ruth Nussinov; Saeed Najafi; Son Tung Ngo; Antoine Loquet; Mara Chiricotto; Pritam Ganguly; James McCarty; Mai Suan Li; Carol Hall; Yiming Wang; Yifat Miller; Simone Melchionna; Birgit Habenstein; Stepan Timr; Jiaxing Chen; Brianna Hnath; Birgit Strodel; Rakez Kayed; Sylvain Lesné; Guanghong Wei; Fabio Sterpone; Andrew J Doig; Philippe Derreumaux
Journal:  Chem Rev       Date:  2021-02-05       Impact factor: 60.622

7.  A lowly populated, transient β-sheet structure in monomeric Aβ1-42 identified by multinuclear NMR of chemical denaturation.

Authors:  Tayeb Kakeshpour; Venkat Ramanujam; C Ashley Barnes; Yang Shen; Jinfa Ying; Ad Bax
Journal:  Biophys Chem       Date:  2020-12-24       Impact factor: 2.352

Review 8.  High-Speed Atomic Force Microscopy Reveals the Structural Dynamics of the Amyloid-β and Amylin Aggregation Pathways.

Authors:  Takahiro Watanabe-Nakayama; Bikash R Sahoo; Ayyalusamy Ramamoorthy; Kenjiro Ono
Journal:  Int J Mol Sci       Date:  2020-06-16       Impact factor: 5.923

9.  An explicitly designed paratope of amyloid-β prevents neuronal apoptosis in vitro and hippocampal damage in rat brain.

Authors:  Ashim Paul; Sourav Kumar; Sujan Kalita; Sourav Kalita; Dibakar Sarkar; Anirban Bhunia; Anupam Bandyopadhyay; Amal Chandra Mondal; Bhubaneswar Mandal
Journal:  Chem Sci       Date:  2020-12-22       Impact factor: 9.825

10.  Ultrasmall Molybdenum Disulfide Quantum Dots Cage Alzheimer's Amyloid Beta to Restore Membrane Fluidity.

Authors:  Yuhuan Li; Huayuan Tang; Houjuan Zhu; Aleksandr Kakinen; Di Wang; Nicholas Andrikopoulos; Yunxiang Sun; Aparna Nandakumar; Eunbi Kwak; Thomas P Davis; David Tai Leong; Feng Ding; Pu Chun Ke
Journal:  ACS Appl Mater Interfaces       Date:  2021-06-18       Impact factor: 10.383

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