| Literature DB >> 31921450 |
Janjira Kreaunakpan1, Kittipong Chainok2, Nathan R Halcovitch3, Edward R T Tiekink4, Teerapong Pirojsirikul1, Saowanit Saithong5.
Abstract
The complete mol-ecule of the binuclear title complex, bis-[μ-1H-1,2,4-triazole-5(4H)-thione-κ2 S:S]bis-{(thio-cyanato-κS)[1H-1,2,4-triazole-5(4H)-thione-κS]silver(I)}, [Ag2(SCN)2(C2H3N3S)4], is generated by crystallographic inversion symmetry. The independent triazole-3-thione ligands employ the exocyclic-S atoms exclusively in coordination. One acts as a terminal S-ligand and the other in a bidentate (μ2) bridging mode to provide a link between two AgI centres. Each AgI atom is also coordinated by a terminal S-bound thio-cyanate ligand, resulting in a distorted AgS4 tetra-hedral coordination geometry. An intra-molecular N-H⋯S(thio-cyanate) hydrogen bond is noted. In the crystal, amine-N-H⋯S(thione), N-H⋯N(triazol-yl) and N-H⋯N(thio-cyanate) hydrogen bonds give rise to a three-dimensional architecture. The packing is consolidated by triazolyl-C-H⋯S(thio-cyanate), triazolyl-C-H⋯N(thiocyanate) and S⋯S [3.2463 (9) Å] inter-actions as well as face-to-face π-π stacking between the independent triazolyl rings [inter-centroid separation = 3.4444 (15) Å]. An analysis of the calculated Hirshfeld surfaces shows the three major contributors are due to N⋯H/H⋯N, S⋯H/H⋯S and C⋯H/H⋯C contacts, at 35.8, 19.4 and 12.7%, respectively; H⋯H contacts contribute only 7.6% to the overall surface. © Kreaunakpan et al. 2020.Entities:
Keywords: 1H-1,2,4-triazole-5(4-H–thione); AgI complex; crystal structure; hydrogen bonding; thiocyanate
Year: 2020 PMID: 31921450 PMCID: PMC6944082 DOI: 10.1107/S2056989019016359
Source DB: PubMed Journal: Acta Crystallogr E Crystallogr Commun
Figure 1The molecular structure of (I) showing displacement ellipsoids at the 70% probability level. The unlabelled atoms are generated by the symmetry operation 1 − x, 1 − y, 1 − z. The dashed lines represent intramolecular amine-N—H⋯S(thiocyanato) hydrogen bonds.
Selected geometric parameters (Å, °)
| Ag—S1 | 2.5596 (7) | C1—S1 | 1.698 (3) |
| Ag—S2 | 2.5103 (6) | C3—S2 | 1.698 (3) |
| Ag—S3 | 2.5374 (7) | C5—S3 | 1.660 (3) |
| Ag—S1i | 2.8188 (7) | ||
| S1—Ag—S2 | 112.49 (2) | S2—Ag—S3 | 127.43 (2) |
| S1—Ag—S3 | 114.64 (2) | S2—Ag—S1i | 99.56 (2) |
| S1—Ag—S1i | 91.60 (2) | S3—Ag—S1i | 101.08 (2) |
Symmetry code: (i) .
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| N1—H1 | 0.88 (1) | 2.72 (2) | 3.555 (2) | 161 (3) |
| N1—H1 | 0.88 (3) | 2.57 (4) | 3.023 (3) | 113 |
| N3—H3 | 0.88 (1) | 2.56 (2) | 3.345 (2) | 150 (3) |
| N4—H4 | 0.80 (4) | 2.38 (4) | 2.900 (3) | 123 (3) |
| N6—H6 | 0.88 (1) | 2.03 (1) | 2.877 (3) | 163 (3) |
| C2—H2⋯S3ii | 0.89 (4) | 2.87 (4) | 3.504 (3) | 129 (3) |
| C2—H2⋯N7vi | 0.89 (4) | 2.66 (3) | 3.184 (4) | 118 (3) |
| C4—H4⋯N7vii | 0.91 (4) | 2.58 (4) | 3.306 (4) | 137 (3) |
Symmetry codes: (ii) ; (iii) ; (iv) ; (v) ; (vi) ; (vii) .
Figure 2A view of the unit-cell contents of (I) in projection down the a axis, with N—H⋯S and N—H⋯N hydrogen bonds shown as orange and blue dashed lines, respectively.
Figure 3The face-to-face π–π stacking of (I).
Figure 4A view of the Hirshfeld surface for (I) mapped over (a) d norm and (b) the electrostatic potential; the red and blue regions represent negative and positive electrostatic potentials, respectively.
Figure 5(a) A comparison of the full two-dimensional fingerprint plot for (I) and those delineated into (b) H⋯H, (c) N⋯H/H⋯N, (d) S⋯S, (e) S⋯H/H⋯S and (f) C⋯H/H⋯C contacts.
Summary of interaction energies (kJ mol−1) calculated for (I)
|
|
|
|
|
|
| Symmetry operation |
|---|---|---|---|---|---|---|
| 11.06 | −142.4 | −31.6 | −39.9 | 77.9 | −138.4 |
|
| 10.68 | −89.0 | −31.2 | −54.8 | 43.5 | −125.0 |
|
| 4.87 | −50.3 | −50.1 | −120.3 | 176.8 | −48.9 |
|
| 16.68 | 22.9 | −3.0 | −1.8 | 0.0 | 19.8 |
|
| 15.95 | 42.9 | −7.4 | −7.5 | 0.8 | 32.8 |
|
Figure 6The colour interaction mapping and energy frameworks for (I) showing the (a) electrostatic potential force, (b) dispersion force and (c) total energy diagrams. All cylindrical radii were adjusted to the same scale factor of 100 with a cut-off value of −50.0 kJ mol−1 within a 3 × 3 × 3 unit cell and their sizes are proportional to the relative strength of the corresponding energies.
Experimental details
| Crystal data | |
| Chemical formula | [Ag2(SCN)2(C2H3N3S)4] |
|
| 736.44 |
| Crystal system, space group | Monoclinic, |
| Temperature (K) | 100 |
|
| 4.8718 (1), 15.9511 (1), 13.9575 (1) |
| β (°) | 96.945 (1) |
|
| 1076.69 (2) |
|
| 2 |
| Radiation type | Cu |
| μ (mm−1) | 20.35 |
| Crystal size (mm) | 0.41 × 0.14 × 0.11 |
| Data collection | |
| Diffractometer | Rigaku Oxford Diffraction SuperNova, Dual, Cu at zero, AtlasS2 |
| Absorption correction | Gaussian ( |
|
| 0.097, 0.453 |
| No. of measured, independent and observed [ | 18122, 2266, 2242 |
|
| 0.039 |
| (sin θ/λ)max (Å−1) | 0.633 |
| Refinement | |
|
| 0.025, 0.066, 1.17 |
| No. of reflections | 2266 |
| No. of parameters | 163 |
| No. of restraints | 10 |
| H-atom treatment | Only H-atom coordinates refined |
| Δρmax, Δρmin (e Å−3) | 0.96, −1.04 |
Computer programs: CrysAlis PRO (Rigaku OD, 2015 ▸), SHELXT (Sheldrick, 2015 ▸), SHELXL2014/7 (Sheldrick, 2015 ▸), Mercury (Macrae et al., 2008 ▸), DIAMOND (Brandenburg, 2006 ▸), WinGX (Farrugia, 2012 ▸) and publCIF (Westrip, 2010 ▸).
| [Ag2(SCN)2(C2H3N3S)4] | |
| Monoclinic, | Cu |
| Cell parameters from 13766 reflections | |
| θ = 3.2–77.1° | |
| µ = 20.35 mm−1 | |
| β = 96.945 (1)° | |
| Prism, colourless | |
| 0.41 × 0.14 × 0.11 mm |
| Rigaku Oxford Diffraction SuperNova, Dual, Cu at zero, AtlasS2 diffractometer | 2266 independent reflections |
| Mirror monochromator | 2242 reflections with |
| Detector resolution: 5.2303 pixels mm-1 | |
| ω scans | θmax = 77.4°, θmin = 4.2° |
| Absorption correction: gaussian (CrysAlisPro; Rigaku OD, 2015) | |
| 18122 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: difference Fourier map | |
| Only H-atom coordinates refined | |
| 2266 reflections | (Δ/σ)max = 0.001 |
| 163 parameters | Δρmax = 0.96 e Å−3 |
| 10 restraints | Δρmin = −1.04 e Å−3 |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Refinement. C5 treated with ISOR |
| Ag | 0.56775 (4) | 0.42032 (2) | 0.59899 (2) | 0.01119 (9) | |
| S1 | 0.81885 (13) | 0.55635 (4) | 0.56609 (4) | 0.00788 (14) | |
| S2 | 0.81257 (13) | 0.29260 (4) | 0.54731 (4) | 0.00780 (14) | |
| S3 | 0.25779 (15) | 0.43047 (4) | 0.73213 (5) | 0.01162 (15) | |
| N1 | 0.4853 (5) | 0.63635 (14) | 0.68422 (16) | 0.0077 (4) | |
| H1N | 0.390 (6) | 0.5923 (15) | 0.698 (3) | 0.009* | |
| N2 | 0.4273 (5) | 0.71516 (14) | 0.71587 (16) | 0.0097 (4) | |
| N3 | 0.7598 (5) | 0.71790 (14) | 0.62260 (16) | 0.0082 (4) | |
| H3N | 0.885 (5) | 0.735 (2) | 0.587 (2) | 0.010* | |
| N4 | 0.4504 (5) | 0.19814 (14) | 0.63991 (16) | 0.0087 (4) | |
| H4N | 0.369 (8) | 0.236 (2) | 0.663 (3) | 0.010* | |
| N5 | 0.3865 (5) | 0.11639 (15) | 0.65884 (17) | 0.0117 (5) | |
| N6 | 0.7280 (5) | 0.12487 (14) | 0.56881 (16) | 0.0089 (4) | |
| H6N | 0.854 (5) | 0.111 (2) | 0.532 (2) | 0.011* | |
| N7 | 0.5604 (6) | 0.40606 (16) | 0.91561 (18) | 0.0150 (5) | |
| C1 | 0.6846 (5) | 0.63623 (16) | 0.62603 (18) | 0.0070 (5) | |
| C2 | 0.5982 (6) | 0.76322 (17) | 0.67677 (19) | 0.0093 (5) | |
| H2 | 0.615 (7) | 0.818 (2) | 0.688 (2) | 0.011* | |
| C3 | 0.6577 (6) | 0.20539 (16) | 0.58544 (18) | 0.0076 (5) | |
| C4 | 0.5594 (6) | 0.07362 (17) | 0.6139 (2) | 0.0110 (6) | |
| H4 | 0.571 (7) | 0.017 (3) | 0.612 (2) | 0.013* | |
| C5 | 0.4422 (6) | 0.41636 (15) | 0.8389 (2) | 0.0089 (5) |
| Ag | 0.01970 (15) | 0.00638 (12) | 0.00859 (12) | 0.00126 (7) | 0.00616 (8) | −0.00024 (6) |
| S1 | 0.0112 (3) | 0.0055 (3) | 0.0077 (3) | 0.0013 (2) | 0.0041 (2) | −0.0004 (2) |
| S2 | 0.0108 (3) | 0.0057 (3) | 0.0078 (3) | 0.0001 (2) | 0.0048 (2) | 0.0008 (2) |
| S3 | 0.0137 (4) | 0.0139 (3) | 0.0078 (3) | −0.0011 (2) | 0.0037 (2) | 0.0010 (2) |
| N1 | 0.0106 (11) | 0.0055 (10) | 0.0080 (10) | −0.0009 (8) | 0.0056 (8) | −0.0010 (8) |
| N2 | 0.0125 (12) | 0.0072 (10) | 0.0101 (11) | −0.0003 (9) | 0.0043 (9) | −0.0023 (8) |
| N3 | 0.0112 (12) | 0.0057 (10) | 0.0085 (10) | −0.0012 (8) | 0.0046 (8) | −0.0004 (8) |
| N4 | 0.0116 (12) | 0.0047 (10) | 0.0112 (11) | 0.0016 (9) | 0.0063 (9) | 0.0005 (8) |
| N5 | 0.0142 (12) | 0.0078 (11) | 0.0139 (11) | −0.0003 (9) | 0.0053 (9) | 0.0018 (8) |
| N6 | 0.0113 (12) | 0.0070 (10) | 0.0094 (10) | 0.0019 (9) | 0.0051 (8) | 0.0002 (8) |
| N7 | 0.0191 (14) | 0.0151 (11) | 0.0118 (12) | −0.0019 (10) | 0.0064 (10) | 0.0013 (9) |
| C1 | 0.0087 (13) | 0.0075 (12) | 0.0045 (11) | 0.0001 (9) | 0.0001 (9) | 0.0014 (9) |
| C2 | 0.0118 (14) | 0.0069 (12) | 0.0097 (12) | −0.0002 (10) | 0.0029 (10) | −0.0026 (9) |
| C3 | 0.0096 (13) | 0.0090 (12) | 0.0042 (11) | 0.0016 (10) | 0.0007 (9) | 0.0000 (9) |
| C4 | 0.0154 (16) | 0.0070 (13) | 0.0111 (13) | −0.0016 (10) | 0.0034 (11) | 0.0017 (9) |
| C5 | 0.0093 (9) | 0.0086 (8) | 0.0096 (9) | −0.0006 (7) | 0.0041 (7) | −0.0005 (7) |
| Ag—S1 | 2.5596 (7) | N3—C2 | 1.363 (3) |
| Ag—S2 | 2.5103 (6) | N3—H3N | 0.877 (10) |
| Ag—S3 | 2.5374 (7) | N4—C3 | 1.341 (3) |
| Ag—S1i | 2.8188 (7) | N4—N5 | 1.374 (3) |
| C1—S1 | 1.698 (3) | N4—H4N | 0.80 (4) |
| S1—Agi | 2.8188 (7) | N5—C4 | 1.302 (4) |
| C3—S2 | 1.698 (3) | N6—C3 | 1.357 (3) |
| C5—S3 | 1.660 (3) | N6—C4 | 1.365 (4) |
| N1—C1 | 1.339 (3) | N6—H6N | 0.878 (7) |
| N1—N2 | 1.373 (3) | N7—C5 | 1.164 (4) |
| N1—H1N | 0.878 (10) | C2—H2 | 0.89 (4) |
| N2—C2 | 1.299 (4) | C4—H4 | 0.91 (4) |
| N3—C1 | 1.356 (3) | ||
| S1—Ag—S2 | 112.49 (2) | C3—N4—H4N | 127 (3) |
| S1—Ag—S3 | 114.64 (2) | N5—N4—H4N | 120 (3) |
| S1—Ag—S1i | 91.60 (2) | C4—N5—N4 | 103.3 (2) |
| S2—Ag—S3 | 127.43 (2) | C3—N6—C4 | 108.0 (2) |
| S2—Ag—S1i | 99.56 (2) | C3—N6—H6N | 123 (2) |
| S3—Ag—S1i | 101.08 (2) | C4—N6—H6N | 128 (2) |
| C1—S1—Ag | 109.08 (9) | N1—C1—N3 | 103.8 (2) |
| C1—S1—Agi | 92.55 (9) | N1—C1—S1 | 130.6 (2) |
| Ag—S1—Agi | 88.40 (2) | N3—C1—S1 | 125.6 (2) |
| C3—S2—Ag | 109.28 (9) | N2—C2—N3 | 111.3 (2) |
| C5—S3—Ag | 110.08 (10) | N2—C2—H2 | 124 (2) |
| C1—N1—N2 | 112.9 (2) | N3—C2—H2 | 124 (2) |
| C1—N1—H1N | 125 (2) | N4—C3—N6 | 103.8 (2) |
| N2—N1—H1N | 122 (2) | N4—C3—S2 | 129.9 (2) |
| C2—N2—N1 | 103.8 (2) | N6—C3—S2 | 126.2 (2) |
| C1—N3—C2 | 108.3 (2) | N5—C4—N6 | 111.6 (2) |
| C1—N3—H3N | 122 (2) | N5—C4—H4 | 126 (2) |
| C2—N3—H3N | 130 (2) | N6—C4—H4 | 122 (2) |
| C3—N4—N5 | 113.3 (2) | N7—C5—S3 | 176.9 (3) |
| C1—N1—N2—C2 | −0.8 (3) | N1—N2—C2—N3 | −0.2 (3) |
| C3—N4—N5—C4 | −0.4 (3) | C1—N3—C2—N2 | 1.0 (3) |
| N2—N1—C1—N3 | 1.4 (3) | N5—N4—C3—N6 | 0.2 (3) |
| N2—N1—C1—S1 | −177.4 (2) | N5—N4—C3—S2 | −177.8 (2) |
| C2—N3—C1—N1 | −1.4 (3) | C4—N6—C3—N4 | 0.1 (3) |
| C2—N3—C1—S1 | 177.5 (2) | C4—N6—C3—S2 | 178.2 (2) |
| Ag—S1—C1—N1 | 1.2 (3) | Ag—S2—C3—N4 | −4.3 (3) |
| Agi—S1—C1—N1 | 90.4 (3) | Ag—S2—C3—N6 | 178.2 (2) |
| Ag—S1—C1—N3 | −177.4 (2) | N4—N5—C4—N6 | 0.4 (3) |
| Agi—S1—C1—N3 | −88.2 (2) | C3—N6—C4—N5 | −0.4 (3) |
| H··· | ||||
| N1—H1 | 0.88 (1) | 2.72 (2) | 3.555 (2) | 161 (3) |
| N1—H1 | 0.88 (3) | 2.57 (4) | 3.023 (3) | 113 |
| N3—H3 | 0.88 (1) | 2.56 (2) | 3.345 (2) | 150 (3) |
| N4—H4 | 0.80 (4) | 2.38 (4) | 2.900 (3) | 123 (3) |
| N6—H6 | 0.88 (1) | 2.03 (1) | 2.877 (3) | 163 (3) |
| C2—H2···S3ii | 0.89 (4) | 2.87 (4) | 3.504 (3) | 129 (3) |
| C2—H2···N7vi | 0.89 (4) | 2.66 (3) | 3.184 (4) | 118 (3) |
| C4—H4···N7vii | 0.91 (4) | 2.58 (4) | 3.306 (4) | 137 (3) |