Literature DB >> 15534375

Novel tools for visualizing and exploring intermolecular interactions in molecular crystals.

Joshua J McKinnon1, Mark A Spackman, Anthony S Mitchell.   

Abstract

A new way of exploring packing modes and intermolecular interactions in molecular crystals is described, using Hirshfeld surfaces to partition crystal space. These molecular Hirshfeld surfaces, so named because they derive from Hirshfeld's stockholder partitioning, divide the crystal into regions where the electron distribution of a sum of spherical atoms for the molecule (the promolecule) dominates the corresponding sum over the crystal (the procrystal). These surfaces reflect intermolecular interactions in a novel visual manner, offering a previously unseen picture of molecular shape in a crystalline environment. Surface features characteristic of different types of intermolecular interactions can be identified, and such features can be revealed by colour coding distances from the surface to the nearest atom exterior or interior to the surface, or by functions of the principal surface curvatures. These simple devices provide a striking and immediate picture of the types of interactions present, and even reflect their relative strengths from molecule to molecule. A complementary two-dimensional mapping is also presented, which summarizes quantitatively the types of intermolecular contacts experienced by molecules in the bulk and presents this information in a convenient colour plot. This paper describes the use of these tools in the compilation of a pictorial glossary of intermolecular interactions, using identifiable patterns of interaction between small molecules to rationalize the often complex mix of interactions displayed by large molecules.

Year:  2004        PMID: 15534375     DOI: 10.1107/S0108768104020300

Source DB:  PubMed          Journal:  Acta Crystallogr B        ISSN: 0108-7681


  130 in total

1.  Crystal Engineering Construction of Caffeic Acid Derivatives with Potential Applications in Pharmaceuticals and Degradable Polymeric Materials.

Authors:  Zhihan Wang; Quinton Flores; Hongye Guo; Raquel Trevizo; Xiaochan Zhang; Shihan Wang
Journal:  CrystEngComm       Date:  2020-10-26       Impact factor: 3.545

2.  Room-temperature ferroelectricity in supramolecular networks of charge-transfer complexes.

Authors:  Alok S Tayi; Alexander K Shveyd; Andrew C-H Sue; Jodi M Szarko; Brian S Rolczynski; Dennis Cao; T Jackson Kennedy; Amy A Sarjeant; Charlotte L Stern; Walter F Paxton; Wei Wu; Sanjeev K Dey; Albert C Fahrenbach; Jeffrey R Guest; Hooman Mohseni; Lin X Chen; Kang L Wang; J Fraser Stoddart; Samuel I Stupp
Journal:  Nature       Date:  2012-08-23       Impact factor: 49.962

3.  Solid-state structures of peapod bearings composed of finite single-wall carbon nanotube and fullerene molecules.

Authors:  Sota Sato; Takashi Yamasaki; Hiroyuki Isobe
Journal:  Proc Natl Acad Sci U S A       Date:  2014-05-27       Impact factor: 11.205

4.  Analysis of two novel 1-4 quinolinone structures with bromine and nitrobenzyl ligands.

Authors:  Lidiane J Michelini; Wesley F Vaz; Giulio D C D'Oliveira; Caridad N Pérez; Hamilton B Napolitano
Journal:  J Mol Model       Date:  2019-02-08       Impact factor: 1.810

5.  A method for fast safety screening of explosives in terms of crystal packing and molecular stability.

Authors:  Xiaohua Hu; Nana Chen; Weichen Li
Journal:  J Mol Model       Date:  2016-07-01       Impact factor: 1.810

6.  Synthesis, characterization, and computational study of a new dimethoxy-chalcone.

Authors:  Ricardo R Ternavisk; Ademir J Camargo; Francisco B C Machado; José A F F Rocco; Gilberto L B Aquino; Valter H C Silva; Hamilton B Napolitano
Journal:  J Mol Model       Date:  2014-11-25       Impact factor: 1.810

7.  Conformation analysis of a novel fluorinated chalcone.

Authors:  Paulo S Carvalho; Jean M F Custodio; Wesley F Vaz; Cassio C Cirilo; Amanda F Cidade; Gilberto L B Aquino; Dulcinea M B Campos; Pedro Cravo; Clarimar J Coelho; Solemar S Oliveira; Ademir J Camargo; Hamilton B Napolitano
Journal:  J Mol Model       Date:  2017-03-01       Impact factor: 1.810

8.  Synthesis, characterization, and computational study of the supramolecular arrangement of a novel cinnamic acid derivative.

Authors:  S S Oliveira; L G Santin; L R Almeida; L A Malaspina; C Lariucci; J F Silva; W B Fernandes; G L B Aquino; R Gargano; A J Camargo; H B Napolitano
Journal:  J Mol Model       Date:  2017-01-24       Impact factor: 1.810

9.  Crystal structure and Hirshfeld surface analysis of trans-2,5-di-methyl-piperazine-1,4-diium tetra-chlorido-cobaltate(II).

Authors:  Meriem Landolsi; Sonia Abid
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2021-03-26

10.  Solid-state luminescence properties, Hirshfeld surface analysis and DFT calculations of mononuclear lanthanide complexes (Ln = EuIII, GdIII, TbIII, DyIII) containing 4'-phenyl-2,2':6',2″-terpyridine.

Authors:  Li Ling Cai; Ya Tao Hu; Yan Li; Kai Wang; Xiu Qing Zhang; Gilles Muller; Xue Ming Li; Gui Xia Wang
Journal:  Inorganica Chim Acta       Date:  2019-02-10       Impact factor: 2.545

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