Literature DB >> 31899416

GANPOP: Generative Adversarial Network Prediction of Optical Properties From Single Snapshot Wide-Field Images.

Mason T Chen, Faisal Mahmood, Jordan A Sweer, Nicholas J Durr.   

Abstract

We present a deep learning framework for wide-field, content-aware estimation of absorption and scattering coefficients of tissues, called Generative Adversarial Network Prediction of Optical Properties (GANPOP). Spatial frequency domain imaging is used to obtain ground-truth optical properties at 660 nm from in vivo human hands and feet, freshly resected human esophagectomy samples, and homogeneous tissue phantoms. Images of objects with either flat-field or structured illumination are paired with registered optical property maps and are used to train conditional generative adversarial networks that estimate optical properties from a single input image. We benchmark this approach by comparing GANPOP to a single-snapshot optical property (SSOP) technique, using a normalized mean absolute error (NMAE) metric. In human gastrointestinal specimens, GANPOP with a single structured-light input image estimates the reduced scattering and absorption coefficients with 60% higher accuracy than SSOP while GANPOP with a single flat-field illumination image achieves similar accuracy to SSOP. When applied to both in vivo and ex vivo swine tissues, a GANPOP model trained solely on structured-illumination images of human specimens and phantoms estimates optical properties with approximately 46% improvement over SSOP, indicating adaptability to new, unseen tissue types. Given a training set that appropriately spans the target domain, GANPOP has the potential to enable rapid and accurate wide-field measurements of optical properties.

Entities:  

Mesh:

Year:  2019        PMID: 31899416     DOI: 10.1109/TMI.2019.2962786

Source DB:  PubMed          Journal:  IEEE Trans Med Imaging        ISSN: 0278-0062            Impact factor:   10.048


  12 in total

1.  Real-time, wide-field and high-quality single snapshot imaging of optical properties with profile correction using deep learning.

Authors:  Enagnon Aguénounon; Jason T Smith; Mahdi Al-Taher; Michele Diana; Xavier Intes; Sylvain Gioux
Journal:  Biomed Opt Express       Date:  2020-09-18       Impact factor: 3.732

2.  Speckle illumination SFDI for projector-free optical property mapping.

Authors:  Mason T Chen; Melina Papadakis; Nicholas J Durr
Journal:  Opt Lett       Date:  2021-02-01       Impact factor: 3.776

3.  Phase function estimation from a diffuse optical image via deep learning.

Authors:  Yuxuan Liang; Chuang Niu; Chen Wei; Shenghan Ren; Wenxiang Cong; Ge Wang
Journal:  Phys Med Biol       Date:  2022-03-25       Impact factor: 4.174

Review 4.  Deep Learning in Biomedical Optics.

Authors:  Lei Tian; Brady Hunt; Muyinatu A Lediju Bell; Ji Yi; Jason T Smith; Marien Ochoa; Xavier Intes; Nicholas J Durr
Journal:  Lasers Surg Med       Date:  2021-05-20

5.  Modeling and Synthesis of Breast Cancer Optical Property Signatures With Generative Models.

Authors:  Arturo Pardo; Samuel S Streeter; Benjamin W Maloney; Jose A Gutierrez-Gutierrez; David M McClatchy; Wendy A Wells; Keith D Paulsen; Jose M Lopez-Higuera; Brian W Pogue; Olga M Conde
Journal:  IEEE Trans Med Imaging       Date:  2021-06-01       Impact factor: 11.037

6.  Rapid tissue oxygenation mapping from snapshot structured-light images with adversarial deep learning.

Authors:  Mason T Chen; Nicholas J Durr
Journal:  J Biomed Opt       Date:  2020-11       Impact factor: 3.170

7.  A review and comparison of breast tumor cell nuclei segmentation performances using deep convolutional neural networks.

Authors:  Andrew Lagree; Majidreza Mohebpour; Nicholas Meti; Khadijeh Saednia; Fang-I Lu; Elzbieta Slodkowska; Sonal Gandhi; Eileen Rakovitch; Alex Shenfield; Ali Sadeghi-Naini; William T Tran
Journal:  Sci Rep       Date:  2021-04-13       Impact factor: 4.379

8.  Spatial frequency domain imaging technology based on Fourier single-pixel imaging.

Authors:  Hui M Ren; Guoqing Deng; Peng Zhou; Xu Kang; Yang Zhang; Jingshu Ni; Yuanzhi Zhang; Yikun Wang
Journal:  J Biomed Opt       Date:  2022-01       Impact factor: 3.758

9.  Developing diagnostic assessment of breast lumpectomy tissues using radiomic and optical signatures.

Authors:  Samuel S Streeter; Brady Hunt; Rebecca A Zuurbier; Wendy A Wells; Keith D Paulsen; Brian W Pogue
Journal:  Sci Rep       Date:  2021-11-08       Impact factor: 4.379

10.  Deep learning-based method to accurately estimate breast tissue optical properties in the presence of the chest wall.

Authors:  Menghao Zhang; Shuying Li; Yun Zou; Quing Zhu
Journal:  J Biomed Opt       Date:  2021-10       Impact factor: 3.758

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