Literature DB >> 33850222

A review and comparison of breast tumor cell nuclei segmentation performances using deep convolutional neural networks.

Andrew Lagree1,2,3,4, Majidreza Mohebpour2, Nicholas Meti3,5, Khadijeh Saednia6, Fang-I Lu3,7, Elzbieta Slodkowska7, Sonal Gandhi3,5, Eileen Rakovitch1,8, Alex Shenfield9, Ali Sadeghi-Naini1,4,10,6, William T Tran11,12,13,14,15,16.   

Abstract

Breast cancer is currently the second most common cause of cancer-related death in women. Presently, the clinical benchmark in cancer diagnosis is tissue biopsy examination. However, the manual process of histopathological analysis is laborious, time-consuming, and limited by the quality of the specimen and the experience of the pathologist. This study's objective was to determine if deep convolutional neural networks can be trained, with transfer learning, on a set of histopathological images independent of breast tissue to segment tumor nuclei of the breast. Various deep convolutional neural networks were evaluated for the study, including U-Net, Mask R-CNN, and a novel network (GB U-Net). The networks were trained on a set of Hematoxylin and Eosin (H&E)-stained images of eight diverse types of tissues. GB U-Net demonstrated superior performance in segmenting sites of invasive diseases (AJI = 0.53, mAP = 0.39 & AJI = 0.54, mAP = 0.38), validated on two hold-out datasets exclusively containing breast tissue images of approximately 7,582 annotated cells. The results of the networks, trained on images independent of breast tissue, demonstrated that tumor nuclei of the breast could be accurately segmented.

Entities:  

Year:  2021        PMID: 33850222     DOI: 10.1038/s41598-021-87496-1

Source DB:  PubMed          Journal:  Sci Rep        ISSN: 2045-2322            Impact factor:   4.379


  25 in total

Review 1.  Breast cancer histopathology image analysis: a review.

Authors:  Mitko Veta; Josien P W Pluim; Paul J van Diest; Max A Viergever
Journal:  IEEE Trans Biomed Eng       Date:  2014-05       Impact factor: 4.538

Review 2.  Histopathological image analysis: a review.

Authors:  Metin N Gurcan; Laura E Boucheron; Ali Can; Anant Madabhushi; Nasir M Rajpoot; B Yener
Journal:  IEEE Rev Biomed Eng       Date:  2009-10-30

3.  Personalized Breast Cancer Treatments Using Artificial Intelligence in Radiomics and Pathomics.

Authors:  William T Tran; Katarzyna Jerzak; Fang-I Lu; Jonathan Klein; Sami Tabbarah; Andrew Lagree; Tina Wu; Ivan Rosado-Mendez; Ethan Law; Khadijeh Saednia; Ali Sadeghi-Naini
Journal:  J Med Imaging Radiat Sci       Date:  2019-08-22

4.  A Dataset and a Technique for Generalized Nuclear Segmentation for Computational Pathology.

Authors:  Neeraj Kumar; Ruchika Verma; Sanuj Sharma; Surabhi Bhargava; Abhishek Vahadane; Amit Sethi
Journal:  IEEE Trans Med Imaging       Date:  2017-03-06       Impact factor: 10.048

5.  Cancer statistics, 2020.

Authors:  Rebecca L Siegel; Kimberly D Miller; Ahmedin Jemal
Journal:  CA Cancer J Clin       Date:  2020-01-08       Impact factor: 508.702

6.  A biosegmentation benchmark for evaluation of bioimage analysis methods.

Authors:  Elisa Drelie Gelasca; Boguslaw Obara; Dmitry Fedorov; Kristian Kvilekval; Bs Manjunath
Journal:  BMC Bioinformatics       Date:  2009-11-01       Impact factor: 3.169

7.  A Dataset for Breast Cancer Histopathological Image Classification.

Authors:  Fabio A Spanhol; Luiz S Oliveira; Caroline Petitjean; Laurent Heutte
Journal:  IEEE Trans Biomed Eng       Date:  2015-10-30       Impact factor: 4.538

Review 8.  Artificial intelligence in digital pathology - new tools for diagnosis and precision oncology.

Authors:  Kaustav Bera; Kurt A Schalper; David L Rimm; Vamsidhar Velcheti; Anant Madabhushi
Journal:  Nat Rev Clin Oncol       Date:  2019-08-09       Impact factor: 66.675

9.  Nucleus segmentation across imaging experiments: the 2018 Data Science Bowl.

Authors:  Juan C Caicedo; Allen Goodman; Kyle W Karhohs; Beth A Cimini; Jeanelle Ackerman; Marzieh Haghighi; CherKeng Heng; Tim Becker; Minh Doan; Claire McQuin; Mohammad Rohban; Shantanu Singh; Anne E Carpenter
Journal:  Nat Methods       Date:  2019-10-21       Impact factor: 28.547

10.  Global, Regional, and National Cancer Incidence, Mortality, Years of Life Lost, Years Lived With Disability, and Disability-Adjusted Life-Years for 29 Cancer Groups, 1990 to 2016: A Systematic Analysis for the Global Burden of Disease Study.

Authors:  Christina Fitzmaurice; Tomi F Akinyemiju; Faris Hasan Al Lami; Tahiya Alam; Reza Alizadeh-Navaei; Christine Allen; Ubai Alsharif; Nelson Alvis-Guzman; Erfan Amini; Benjamin O Anderson; Olatunde Aremu; Al Artaman; Solomon Weldegebreal Asgedom; Reza Assadi; Tesfay Mehari Atey; Leticia Avila-Burgos; Ashish Awasthi; Huda Omer Ba Saleem; Aleksandra Barac; James R Bennett; Isabela M Bensenor; Nickhill Bhakta; Hermann Brenner; Lucero Cahuana-Hurtado; Carlos A Castañeda-Orjuela; Ferrán Catalá-López; Jee-Young Jasmine Choi; Devasahayam Jesudas Christopher; Sheng-Chia Chung; Maria Paula Curado; Lalit Dandona; Rakhi Dandona; José das Neves; Subhojit Dey; Samath D Dharmaratne; David Teye Doku; Tim R Driscoll; Manisha Dubey; Hedyeh Ebrahimi; Dumessa Edessa; Ziad El-Khatib; Aman Yesuf Endries; Florian Fischer; Lisa M Force; Kyle J Foreman; Solomon Weldemariam Gebrehiwot; Sameer Vali Gopalani; Giuseppe Grosso; Rahul Gupta; Bishal Gyawali; Randah Ribhi Hamadeh; Samer Hamidi; James Harvey; Hamid Yimam Hassen; Roderick J Hay; Simon I Hay; Behzad Heibati; Molla Kahssay Hiluf; Nobuyuki Horita; H Dean Hosgood; Olayinka S Ilesanmi; Kaire Innos; Farhad Islami; Mihajlo B Jakovljevic; Sarah Charlotte Johnson; Jost B Jonas; Amir Kasaeian; Tesfaye Dessale Kassa; Yousef Saleh Khader; Ejaz Ahmad Khan; Gulfaraz Khan; Young-Ho Khang; Mohammad Hossein Khosravi; Jagdish Khubchandani; Jacek A Kopec; G Anil Kumar; Michael Kutz; Deepesh Pravinkumar Lad; Alessandra Lafranconi; Qing Lan; Yirga Legesse; James Leigh; Shai Linn; Raimundas Lunevicius; Azeem Majeed; Reza Malekzadeh; Deborah Carvalho Malta; Lorenzo G Mantovani; Brian J McMahon; Toni Meier; Yohannes Adama Melaku; Mulugeta Melku; Peter Memiah; Walter Mendoza; Tuomo J Meretoja; Haftay Berhane Mezgebe; Ted R Miller; Shafiu Mohammed; Ali H Mokdad; Mahmood Moosazadeh; Paula Moraga; Seyyed Meysam Mousavi; Vinay Nangia; Cuong Tat Nguyen; Vuong Minh Nong; Felix Akpojene Ogbo; Andrew Toyin Olagunju; Mahesh Pa; Eun-Kee Park; Tejas Patel; David M Pereira; Farhad Pishgar; Maarten J Postma; Farshad Pourmalek; Mostafa Qorbani; Anwar Rafay; Salman Rawaf; David Laith Rawaf; Gholamreza Roshandel; Saeid Safiri; Hamideh Salimzadeh; Juan Ramon Sanabria; Milena M Santric Milicevic; Benn Sartorius; Maheswar Satpathy; Sadaf G Sepanlou; Katya Anne Shackelford; Masood Ali Shaikh; Mahdi Sharif-Alhoseini; Jun She; Min-Jeong Shin; Ivy Shiue; Mark G Shrime; Abiy Hiruye Sinke; Mekonnen Sisay; Amber Sligar; Muawiyyah Babale Sufiyan; Bryan L Sykes; Rafael Tabarés-Seisdedos; Gizachew Assefa Tessema; Roman Topor-Madry; Tung Thanh Tran; Bach Xuan Tran; Kingsley Nnanna Ukwaja; Vasiliy Victorovich Vlassov; Stein Emil Vollset; Elisabete Weiderpass; Hywel C Williams; Nigus Bililign Yimer; Naohiro Yonemoto; Mustafa Z Younis; Christopher J L Murray; Mohsen Naghavi
Journal:  JAMA Oncol       Date:  2018-11-01       Impact factor: 31.777

View more
  4 in total

1.  Recursive Training Strategy for a Deep Learning Network for Segmentation of Pathology Nuclei With Incomplete Annotation.

Authors:  Chuan Zhou; Heang-Ping Chan; Lubomir M Hadjiiski; Aamer Chughtai
Journal:  IEEE Access       Date:  2022-05-05       Impact factor: 3.476

2.  Assessment of Digital Pathology Imaging Biomarkers Associated with Breast Cancer Histologic Grade.

Authors:  Andrew Lagree; Audrey Shiner; Marie Angeli Alera; Lauren Fleshner; Ethan Law; Brianna Law; Fang-I Lu; David Dodington; Sonal Gandhi; Elzbieta A Slodkowska; Alex Shenfield; Katarzyna J Jerzak; Ali Sadeghi-Naini; William T Tran
Journal:  Curr Oncol       Date:  2021-10-27       Impact factor: 3.677

Review 3.  Software tools and platforms in Digital Pathology: a review for clinicians and computer scientists.

Authors:  Rodrigo Escobar Díaz Guerrero; Lina Carvalho; Thomas Bocklitz; Juergen Popp; José Luis Oliveira
Journal:  J Pathol Inform       Date:  2022-06-03

4.  Deep Learning on Histopathology Images for Breast Cancer Classification: A Bibliometric Analysis.

Authors:  Siti Shaliza Mohd Khairi; Mohd Aftar Abu Bakar; Mohd Almie Alias; Sakhinah Abu Bakar; Choong-Yeun Liong; Nurwahyuna Rosli; Mohsen Farid
Journal:  Healthcare (Basel)       Date:  2021-12-22
  4 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.