Literature DB >> 33149980

Real-time, wide-field and high-quality single snapshot imaging of optical properties with profile correction using deep learning.

Enagnon Aguénounon1, Jason T Smith2, Mahdi Al-Taher3,4, Michele Diana1,3,5, Xavier Intes2, Sylvain Gioux1.   

Abstract

The development of real-time, wide-field and quantitative diffuse optical imaging methods to visualize functional and structural biomarkers of living tissues is a pressing need for numerous clinical applications including image-guided surgery. In this context, Spatial Frequency Domain Imaging (SFDI) is an attractive method allowing for the fast estimation of optical properties using the Single Snapshot of Optical Properties (SSOP) approach. Herein, we present a novel implementation of SSOP based on a combination of deep learning network at the filtering stage and Graphics Processing Units (GPU) capable of simultaneous high visual quality image reconstruction, surface profile correction and accurate optical property (OP) extraction in real-time across large fields of view. In the most optimal implementation, the presented methodology demonstrates megapixel profile-corrected OP imaging with results comparable to that of profile-corrected SFDI, with a processing time of 18 ms and errors relative to SFDI method less than 10% in both profilometry and profile-corrected OPs. This novel processing framework lays the foundation for real-time multispectral quantitative diffuse optical imaging for surgical guidance and healthcare applications. All code and data used for this work is publicly available at www.healthphotonics.org under the resources tab.
© 2020 Optical Society of America under the terms of the OSA Open Access Publishing Agreement.

Year:  2020        PMID: 33149980      PMCID: PMC7587245          DOI: 10.1364/BOE.397681

Source DB:  PubMed          Journal:  Biomed Opt Express        ISSN: 2156-7085            Impact factor:   3.732


  28 in total

1.  Three-dimensional surface profile intensity correction for spatially modulated imaging.

Authors:  Sylvain Gioux; Amaan Mazhar; David J Cuccia; Anthony J Durkin; Bruce J Tromberg; John V Frangioni
Journal:  J Biomed Opt       Date:  2009 May-Jun       Impact factor: 3.170

Review 2.  Medical image segmentation on GPUs--a comprehensive review.

Authors:  Erik Smistad; Thomas L Falch; Mohammadmehdi Bozorgi; Anne C Elster; Frank Lindseth
Journal:  Med Image Anal       Date:  2014-12-02       Impact factor: 8.545

3.  Ultrafast optical property map generation using lookup tables.

Authors:  Joseph Angelo; Christina R Vargas; Bernard T Lee; Irving J Bigio; Sylvain Gioux
Journal:  J Biomed Opt       Date:  2016-11-01       Impact factor: 3.170

4.  Single snapshot imaging of optical properties.

Authors:  Jean Vervandier; Sylvain Gioux
Journal:  Biomed Opt Express       Date:  2013-11-22       Impact factor: 3.732

5.  First-in-human pilot study of a spatial frequency domain oxygenation imaging system.

Authors:  Sylvain Gioux; Amaan Mazhar; Bernard T Lee; Samuel J Lin; Adam M Tobias; David J Cuccia; Alan Stockdale; Rafiou Oketokoun; Yoshitomo Ashitate; Edward Kelly; Maxwell Weinmann; Nicholas J Durr; Lorissa A Moffitt; Anthony J Durkin; Bruce J Tromberg; John V Frangioni
Journal:  J Biomed Opt       Date:  2011-08       Impact factor: 3.170

Review 6.  Preoperative mapping of nonmelanoma skin cancer using spatial frequency domain and ultrasound imaging.

Authors:  Daniel J Rohrbach; Daniel Muffoletto; Jonathan Huihui; Rolf Saager; Kenneth Keymel; Anne Paquette; Janet Morgan; Nathalie Zeitouni; Ulas Sunar
Journal:  Acad Radiol       Date:  2014-02       Impact factor: 3.173

7.  Interactive Medical Image Segmentation Using Deep Learning With Image-Specific Fine Tuning.

Authors:  Guotai Wang; Wenqi Li; Maria A Zuluaga; Rosalind Pratt; Premal A Patel; Michael Aertsen; Tom Doel; Anna L David; Jan Deprest; Sebastien Ourselin; Tom Vercauteren
Journal:  IEEE Trans Med Imaging       Date:  2018-07       Impact factor: 10.048

8.  Machine learning approach for rapid and accurate estimation of optical properties using spatial frequency domain imaging.

Authors:  Swapnesh Panigrahi; Sylvain Gioux
Journal:  J Biomed Opt       Date:  2018-12       Impact factor: 3.170

9.  Single snapshot of optical properties image quality improvement using anisotropic two-dimensional windows filtering.

Authors:  Enagnon Aguénounon; Foudil Dadouche; Wilfried Uhring; Sylvain Gioux
Journal:  J Biomed Opt       Date:  2019-03       Impact factor: 3.170

10.  OpenSFDI: an open-source guide for constructing a spatial frequency domain imaging system.

Authors:  Matthew Applegate; Kavon Karrobi; Joseph Angelo; Wyatt Austin; Syeda Tabassum; Enagnon Aguénounon; Karissa Tilbury; Rolf Saager; Sylvain Gioux; Darren Roblyer
Journal:  J Biomed Opt       Date:  2020-01       Impact factor: 3.170

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  8 in total

1.  Speckle illumination SFDI for projector-free optical property mapping.

Authors:  Mason T Chen; Melina Papadakis; Nicholas J Durr
Journal:  Opt Lett       Date:  2021-02-01       Impact factor: 3.776

2.  3D k-space reflectance fluorescence tomography via deep learning.

Authors:  Navid Ibtehaj Nizam; Marien Ochoa; Jason T Smith; Xavier Intes
Journal:  Opt Lett       Date:  2022-03-15       Impact factor: 3.560

3.  Multi-laboratory performance assessment of diffuse optics instruments: the BitMap exercise.

Authors:  Pranav Lanka; Lin Yang; David Orive-Miguel; Joshua Deepak Veesa; Susanna Tagliabue; Aleh Sudakou; Saeed Samaei; Mario Forcione; Zuzana Kovacsova; Anurag Behera; Thomas Gladytz; Dirk Grosenick; Lionel Hervé; Turgut Durduran; Karolina Bejm; Magdalena Morawiec; Michał Kacprzak; Piotr Sawosz; Anna Gerega; Adam Liebert; Antonio Belli; Ilias Tachtsidis; Frédéric Lange; Gemma Bale; Luca Baratelli; Sylvain Gioux; Kalyanov Alexander; Martin Wolf; Sanathana Konugolu Venkata Sekar; Marta Zanoletti; Ileana Pirovano; Michele Lacerenza; Lina Qiu; Edoardo Ferocino; Giulia Maffeis; Caterina Amendola; Lorenzo Colombo; Lorenzo Frabasile; Pietro Levoni; Mauro Buttafava; Marco Renna; Laura Di Sieno; Rebecca Re; Andrea Farina; Lorenzo Spinelli; Alberto Dalla Mora; Davide Contini; Paola Taroni; Alberto Tosi; Alessandro Torricelli; Hamid Dehghani; Heidrun Wabnitz; Antonio Pifferi
Journal:  J Biomed Opt       Date:  2022-06       Impact factor: 3.758

4.  Intravital mesoscopic fluorescence molecular tomography allows non-invasive in vivo monitoring and quantification of breast cancer growth dynamics.

Authors:  Mehmet S Ozturk; Marta G Montero; Ling Wang; Lucas M Chaible; Martin Jechlinger; Robert Prevedel
Journal:  Commun Biol       Date:  2021-05-11

Review 5.  Deep Learning in Biomedical Optics.

Authors:  Lei Tian; Brady Hunt; Muyinatu A Lediju Bell; Ji Yi; Jason T Smith; Marien Ochoa; Xavier Intes; Nicholas J Durr
Journal:  Lasers Surg Med       Date:  2021-05-20

6.  Single Snapshot Imaging of Optical Properties (SSOP) for Perfusion Assessment during Gastric Conduit Creation for Esophagectomy: An Experimental Study on Pigs.

Authors:  Lorenzo Cinelli; Eric Felli; Luca Baratelli; Silvère Ségaud; Andrea Baiocchini; Nariaki Okamoto; María Rita Rodríguez-Luna; Ugo Elmore; Riccardo Rosati; Stefano Partelli; Jacques Marescaux; Sylvain Gioux; Michele Diana
Journal:  Cancers (Basel)       Date:  2021-12-02       Impact factor: 6.639

7.  Halftone spatial frequency domain imaging enables kilohertz high-speed label-free non-contact quantitative mapping of optical properties for strongly turbid media.

Authors:  Yanyu Zhao; Bowen Song; Ming Wang; Yang Zhao; Yubo Fan
Journal:  Light Sci Appl       Date:  2021-12-09       Impact factor: 17.782

Review 8.  Deep learning in macroscopic diffuse optical imaging.

Authors:  Jason T Smith; Marien Ochoa; Denzel Faulkner; Grant Haskins; Xavier Intes
Journal:  J Biomed Opt       Date:  2022-02       Impact factor: 3.758

  8 in total

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