Literature DB >> 31810533

The Biogenesis and Precise Control of RNA m6A Methylation.

Huilin Huang1, Hengyou Weng2, Jianjun Chen3.   

Abstract

N6-Methyladenosine (m6A) is the most prevalent internal RNA modification in mRNA, and has been found to be highly conserved and hard-coded in mammals and other eukaryotic species. The importance of m6A for gene expression regulation and cell fate decisions has been well acknowledged in the past few years. However, it was only until recently that the mechanisms underlying the biogenesis and specificity of m6A modification in cells were uncovered. We review up-to-date knowledge on the biogenesis of the RNA m6A modification, including the cis-regulatory elements and trans-acting factors that determine general de novo m6A deposition and modulate cell type-specific m6A patterns, and we discuss the biological significance of such regulation.
Copyright © 2019 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  H3K36me3; RNA modification; biogenesis; dynamic control; epitranscriptome; m(6)A deposition

Mesh:

Substances:

Year:  2019        PMID: 31810533      PMCID: PMC6925345          DOI: 10.1016/j.tig.2019.10.011

Source DB:  PubMed          Journal:  Trends Genet        ISSN: 0168-9525            Impact factor:   11.639


  87 in total

1.  Cytoplasmic m6A reader YTHDF3 promotes mRNA translation.

Authors:  Ang Li; Yu-Sheng Chen; Xiao-Li Ping; Xin Yang; Wen Xiao; Ying Yang; Hui-Ying Sun; Qin Zhu; Poonam Baidya; Xing Wang; Devi Prasad Bhattarai; Yong-Liang Zhao; Bao-Fa Sun; Yun-Gui Yang
Journal:  Cell Res       Date:  2017-01-20       Impact factor: 25.617

2.  Ythdc2 is an N6-methyladenosine binding protein that regulates mammalian spermatogenesis.

Authors:  Phillip J Hsu; Yunfei Zhu; Honghui Ma; Yueshuai Guo; Xiaodan Shi; Yuanyuan Liu; Meijie Qi; Zhike Lu; Hailing Shi; Jianying Wang; Yiwei Cheng; Guanzheng Luo; Qing Dai; Mingxi Liu; Xuejiang Guo; Jiahao Sha; Bin Shen; Chuan He
Journal:  Cell Res       Date:  2017-08-15       Impact factor: 25.617

3.  Detection of N6-methyladenosine based on the methyl-sensitivity of MazF RNA endonuclease.

Authors:  Miki Imanishi; Shogo Tsuji; Akiyo Suda; Shiroh Futaki
Journal:  Chem Commun (Camb)       Date:  2017-11-30       Impact factor: 6.222

4.  Structural Basis for Cooperative Function of Mettl3 and Mettl14 Methyltransferases.

Authors:  Ping Wang; Katelyn A Doxtader; Yunsun Nam
Journal:  Mol Cell       Date:  2016-06-30       Impact factor: 17.970

5.  Single-nucleotide-resolution mapping of m6A and m6Am throughout the transcriptome.

Authors:  Bastian Linder; Anya V Grozhik; Anthony O Olarerin-George; Cem Meydan; Christopher E Mason; Samie R Jaffrey
Journal:  Nat Methods       Date:  2015-06-29       Impact factor: 28.547

6.  RMBase v2.0: deciphering the map of RNA modifications from epitranscriptome sequencing data.

Authors:  Jia-Jia Xuan; Wen-Ju Sun; Peng-Hui Lin; Ke-Ren Zhou; Shun Liu; Ling-Ling Zheng; Liang-Hu Qu; Jian-Hua Yang
Journal:  Nucleic Acids Res       Date:  2018-01-04       Impact factor: 16.971

7.  m6A-dependent maternal mRNA clearance facilitates zebrafish maternal-to-zygotic transition.

Authors:  Boxuan Simen Zhao; Xiao Wang; Alana V Beadell; Zhike Lu; Hailing Shi; Adam Kuuspalu; Robert K Ho; Chuan He
Journal:  Nature       Date:  2017-02-13       Impact factor: 49.962

8.  Zc3h13/Flacc is required for adenosine methylation by bridging the mRNA-binding factor Rbm15/Spenito to the m6A machinery component Wtap/Fl(2)d.

Authors:  Philip Knuckles; Tina Lence; Irmgard U Haussmann; Dominik Jacob; Nastasja Kreim; Sarah H Carl; Irene Masiello; Tina Hares; Rodrigo Villaseñor; Daniel Hess; Miguel A Andrade-Navarro; Marco Biggiogera; Mark Helm; Matthias Soller; Marc Bühler; Jean-Yves Roignant
Journal:  Genes Dev       Date:  2018-03-13       Impact factor: 11.361

9.  Single-base mapping of m6A by an antibody-independent method.

Authors:  Zhang Zhang; Li-Qian Chen; Yu-Li Zhao; Cai-Guang Yang; Ian A Roundtree; Zijie Zhang; Jian Ren; Wei Xie; Chuan He; Guan-Zheng Luo
Journal:  Sci Adv       Date:  2019-07-03       Impact factor: 14.136

10.  Cap-specific, terminal N6-methylation by a mammalian m6Am methyltransferase.

Authors:  Hanxiao Sun; Meiling Zhang; Kai Li; Dongsheng Bai; Chengqi Yi
Journal:  Cell Res       Date:  2018-11-28       Impact factor: 25.617

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  69 in total

Review 1.  DNA N6-methyldeoxyadenosine in mammals and human disease.

Authors:  Chao Shen; Kitty Wang; Xiaolan Deng; Jianjun Chen
Journal:  Trends Genet       Date:  2022-01-03       Impact factor: 11.639

Review 2.  Function of m6A and its regulation of domesticated animals' complex traits.

Authors:  Siyuan Mi; Yuanjun Shi; Gerile Dari; Ying Yu
Journal:  J Anim Sci       Date:  2022-03-01       Impact factor: 3.159

Review 3.  m6A Modification in Coding and Non-coding RNAs: Roles and Therapeutic Implications in Cancer.

Authors:  Huilin Huang; Hengyou Weng; Jianjun Chen
Journal:  Cancer Cell       Date:  2020-03-16       Impact factor: 31.743

Review 4.  The clever strategies used by intracellular parasites to hijack host gene expression.

Authors:  Marie Villares; Jérémy Berthelet; Jonathan B Weitzman
Journal:  Semin Immunopathol       Date:  2020-01-30       Impact factor: 9.623

Review 5.  N6-Adenosine Methylation (m6A) RNA Modification: an Emerging Role in Cardiovascular Diseases.

Authors:  Ye-Shi Chen; Xin-Ping Ouyang; Xiao-Hua Yu; Petr Novák; Le Zhou; Ping-Ping He; Kai Yin
Journal:  J Cardiovasc Transl Res       Date:  2021-02-25       Impact factor: 4.132

6.  METTL3-mediated m6A methylation negatively modulates autophagy to support porcine blastocyst development‡.

Authors:  Zubing Cao; Ling Zhang; Renyun Hong; Yunsheng Li; Yiqing Wang; Xin Qi; Wei Ning; Di Gao; Tengteng Xu; Yangyang Ma; Tong Yu; Jason G Knott; Anucha Sathanawongs; Yunhai Zhang
Journal:  Biol Reprod       Date:  2021-05-07       Impact factor: 4.285

Review 7.  Deciphering RNA modifications at base resolution: from chemistry to biology.

Authors:  Turja K Debnath; Blerta Xhemalçe
Journal:  Brief Funct Genomics       Date:  2021-03-27       Impact factor: 4.241

Review 8.  The m6A epitranscriptome on neural development and degeneration.

Authors:  Ya-Ping Yen; Jun-An Chen
Journal:  J Biomed Sci       Date:  2021-05-27       Impact factor: 8.410

9.  RNA m6A reader YTHDF2 facilitates lung adenocarcinoma cell proliferation and metastasis by targeting the AXIN1/Wnt/β-catenin signaling.

Authors:  Yin Li; Hao Sheng; Feng Ma; Qiang Wu; Jianfang Huang; Qiang Chen; Lianghe Sheng; Xinghai Zhu; Xiaoxi Zhu; Meng Xu
Journal:  Cell Death Dis       Date:  2021-05-13       Impact factor: 8.469

10.  m6A modification regulates lung fibroblast-to-myofibroblast transition through modulating KCNH6 mRNA translation.

Authors:  Jia-Xiang Zhang; Pei-Jie Huang; Da-Peng Wang; Wen-Yu Yang; Jian Lu; Yong Zhu; Xiao-Xiao Meng; Xin Wu; Qiu-Hai Lin; Hui Lv; Hui Xie; Rui-Lan Wang
Journal:  Mol Ther       Date:  2021-06-08       Impact factor: 11.454

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