Literature DB >> 31772717

3D FULLY CONVOLUTIONAL NETWORKS FOR CO-SEGMENTATION OF TUMORS ON PET-CT IMAGES.

Zisha Zhong1, Yusung Kim2, Leixin Zhou1, Kristin Plichta2, Bryan Allen2, John Buatti2, Xiaodong Wu1,2.   

Abstract

Positron emission tomography and computed tomography (PET-CT) dual-modality imaging provides critical diagnostic information in modern cancer diagnosis and therapy. Automated accurate tumor delineation is essentially important in computer-assisted tumor reading and interpretation based on PET-CT. In this paper, we propose a novel approach for the segmentation of lung tumors that combines the powerful fully convolutional networks (FCN) based semantic segmentation framework (3D-UNet) and the graph cut based co-segmentation model. First, two separate deep UNets are trained on PET and CT, separately, to learn high level discriminative features to generate tumor/non-tumor masks and probability maps for PET and CT images. Then, the two probability maps on PET and CT are further simultaneously employed in a graph cut based co-segmentation model to produce the final tumor segmentation results. Comparative experiments on 32 PET-CT scans of lung cancer patients demonstrate the effectiveness of our method.

Entities:  

Keywords:  co-segmentation; deep learning; fully convolutional networks; image segmentation; lung tumor segmentation

Year:  2018        PMID: 31772717      PMCID: PMC6878113          DOI: 10.1109/ISBI.2018.8363561

Source DB:  PubMed          Journal:  Proc IEEE Int Symp Biomed Imaging        ISSN: 1945-7928


  10 in total

1.  Simultaneous truth and performance level estimation (STAPLE): an algorithm for the validation of image segmentation.

Authors:  Simon K Warfield; Kelly H Zou; William M Wells
Journal:  IEEE Trans Med Imaging       Date:  2004-07       Impact factor: 10.048

2.  Random Walk and Graph Cut for Co-Segmentation of Lung Tumor on PET-CT Images.

Authors:  Wei Ju; Dehui Xiang; Deihui Xiang; Bin Zhang; Lirong Wang; Ivica Kopriva; Xinjian Chen
Journal:  IEEE Trans Image Process       Date:  2015-10-08       Impact factor: 10.856

3.  Computer-aided staging of lymphoma patients with FDG PET/CT imaging based on textural information.

Authors:  C Lartizien; M Rogez; E Niaf; F Ricard
Journal:  IEEE J Biomed Health Inform       Date:  2013-09-27       Impact factor: 5.772

Review 4.  A survey on deep learning in medical image analysis.

Authors:  Geert Litjens; Thijs Kooi; Babak Ehteshami Bejnordi; Arnaud Arindra Adiyoso Setio; Francesco Ciompi; Mohsen Ghafoorian; Jeroen A W M van der Laak; Bram van Ginneken; Clara I Sánchez
Journal:  Med Image Anal       Date:  2017-07-26       Impact factor: 8.545

Review 5.  Characterization of PET/CT images using texture analysis: the past, the present… any future?

Authors:  Mathieu Hatt; Florent Tixier; Larry Pierce; Paul E Kinahan; Catherine Cheze Le Rest; Dimitris Visvikis
Journal:  Eur J Nucl Med Mol Imaging       Date:  2016-06-06       Impact factor: 9.236

6.  Fully Convolutional Networks for Semantic Segmentation.

Authors:  Evan Shelhamer; Jonathan Long; Trevor Darrell
Journal:  IEEE Trans Pattern Anal Mach Intell       Date:  2016-05-24       Impact factor: 6.226

7.  Globally optimal tumor segmentation in PET-CT images: a graph-based co-segmentation method.

Authors:  Dongfeng Han; John Bayouth; Qi Song; Aakant Taurani; Milan Sonka; John Buatti; Xiaodong Wu
Journal:  Inf Process Med Imaging       Date:  2011

8.  Joint segmentation of anatomical and functional images: applications in quantification of lesions from PET, PET-CT, MRI-PET, and MRI-PET-CT images.

Authors:  Ulas Bagci; Jayaram K Udupa; Neil Mendhiratta; Brent Foster; Ziyue Xu; Jianhua Yao; Xinjian Chen; Daniel J Mollura
Journal:  Med Image Anal       Date:  2013-05-23       Impact factor: 8.545

Review 9.  Deep Learning in Medical Image Analysis.

Authors:  Dinggang Shen; Guorong Wu; Heung-Il Suk
Journal:  Annu Rev Biomed Eng       Date:  2017-03-09       Impact factor: 9.590

10.  Optimal co-segmentation of tumor in PET-CT images with context information.

Authors:  Qi Song; Junjie Bai; Dongfeng Han; Sudershan Bhatia; Wenqing Sun; William Rockey; John E Bayouth; John M Buatti; Xiaodong Wu
Journal:  IEEE Trans Med Imaging       Date:  2013-05-16       Impact factor: 10.048

  10 in total
  5 in total

1.  Deep learning-based tumour segmentation and total metabolic tumour volume prediction in the prognosis of diffuse large B-cell lymphoma patients in 3D FDG-PET images.

Authors:  Chong Jiang; Kai Chen; Yue Teng; Chongyang Ding; Zhengyang Zhou; Yang Gao; Junhua Wu; Jian He; Kelei He; Junfeng Zhang
Journal:  Eur Radiol       Date:  2022-02-15       Impact factor: 5.315

2.  Deep Learning for Variational Multimodality Tumor Segmentation in PET/CT.

Authors:  Laquan Li; Xiangming Zhao; Wei Lu; Shan Tan
Journal:  Neurocomputing       Date:  2019-04-24       Impact factor: 5.719

Review 3.  Artificial intelligence in molecular imaging.

Authors:  Edward H Herskovits
Journal:  Ann Transl Med       Date:  2021-05

4.  Convolutional neural networks for PET functional volume fully automatic segmentation: development and validation in a multi-center setting.

Authors:  Andrei Iantsen; Marta Ferreira; Francois Lucia; Vincent Jaouen; Caroline Reinhold; Pietro Bonaffini; Joanne Alfieri; Ramon Rovira; Ingrid Masson; Philippe Robin; Augustin Mervoyer; Caroline Rousseau; Frédéric Kridelka; Marjolein Decuypere; Pierre Lovinfosse; Olivier Pradier; Roland Hustinx; Ulrike Schick; Dimitris Visvikis; Mathieu Hatt
Journal:  Eur J Nucl Med Mol Imaging       Date:  2021-03-27       Impact factor: 9.236

5.  Tumor Segmentation in Patients with Head and Neck Cancers Using Deep Learning Based-on Multi-modality PET/CT Images.

Authors:  Mohamed A Naser; Lisanne V van Dijk; Renjie He; Kareem A Wahid; Clifton D Fuller
Journal:  Head Neck Tumor Segm (2020)       Date:  2021-01-13
  5 in total

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