Literature DB >> 23837967

Joint segmentation of anatomical and functional images: applications in quantification of lesions from PET, PET-CT, MRI-PET, and MRI-PET-CT images.

Ulas Bagci1, Jayaram K Udupa, Neil Mendhiratta, Brent Foster, Ziyue Xu, Jianhua Yao, Xinjian Chen, Daniel J Mollura.   

Abstract

We present a novel method for the joint segmentation of anatomical and functional images. Our proposed methodology unifies the domains of anatomical and functional images, represents them in a product lattice, and performs simultaneous delineation of regions based on random walk image segmentation. Furthermore, we also propose a simple yet effective object/background seed localization method to make the proposed segmentation process fully automatic. Our study uses PET, PET-CT, MRI-PET, and fused MRI-PET-CT scans (77 studies in all) from 56 patients who had various lesions in different body regions. We validated the effectiveness of the proposed method on different PET phantoms as well as on clinical images with respect to the ground truth segmentation provided by clinicians. Experimental results indicate that the presented method is superior to threshold and Bayesian methods commonly used in PET image segmentation, is more accurate and robust compared to the other PET-CT segmentation methods recently published in the literature, and also it is general in the sense of simultaneously segmenting multiple scans in real-time with high accuracy needed in routine clinical use. Published by Elsevier B.V.

Entities:  

Keywords:  MRI-PET Co-segmentation; PET segmentation; PET-CT Co-segmentation; Random Walk; Simultaneous segmentation

Mesh:

Year:  2013        PMID: 23837967      PMCID: PMC3795997          DOI: 10.1016/j.media.2013.05.004

Source DB:  PubMed          Journal:  Med Image Anal        ISSN: 1361-8415            Impact factor:   8.545


  60 in total

1.  Variability in PET quantitation within a multicenter consortium.

Authors:  Frederic H Fahey; Paul E Kinahan; Robert K Doot; Mehmet Kocak; Harold Thurston; Tina Young Poussaint
Journal:  Med Phys       Date:  2010-07       Impact factor: 4.071

Review 2.  PET-guided delineation of radiation therapy treatment volumes: a survey of image segmentation techniques.

Authors:  Habib Zaidi; Issam El Naqa
Journal:  Eur J Nucl Med Mol Imaging       Date:  2010-03-25       Impact factor: 9.236

3.  Automatic best reference slice selection for smooth volume reconstruction of a mouse brain from histological images.

Authors:  Ulaş Bagci; Li Bai
Journal:  IEEE Trans Med Imaging       Date:  2010-06-14       Impact factor: 10.048

4.  A gradient-based method for segmenting FDG-PET images: methodology and validation.

Authors:  Xavier Geets; John A Lee; Anne Bol; Max Lonneux; Vincent Grégoire
Journal:  Eur J Nucl Med Mol Imaging       Date:  2007-03-13       Impact factor: 9.236

5.  Automatic anatomy recognition via multiobject oriented active shape models.

Authors:  Xinjian Chen; Jayaram K Udupa; Abass Alavi; Drew A Torigian
Journal:  Med Phys       Date:  2010-12       Impact factor: 4.071

6.  A novel fuzzy C-means algorithm for unsupervised heterogeneous tumor quantification in PET.

Authors:  Saoussen Belhassen; Habib Zaidi
Journal:  Med Phys       Date:  2010-03       Impact factor: 4.071

Review 7.  Fundamentals of PET and PET/CT imaging.

Authors:  Sandip Basu; Thomas C Kwee; Suleman Surti; Esma A Akin; Don Yoo; Abass Alavi
Journal:  Ann N Y Acad Sci       Date:  2011-06       Impact factor: 5.691

8.  The role of fluorodeoxyglucose-positron emission tomography/computed tomography in differentiating between benign and malignant adrenal lesions.

Authors:  Pelin Ozcan Kara; Taylan Kara; Gonca Kara Gedik; Fatih Kara; Ozlem Sahin; Emel Ceylan Gunay; Oktay Sari
Journal:  Nucl Med Commun       Date:  2011-02       Impact factor: 1.690

9.  Concurrent multimodality image segmentation by active contours for radiotherapy treatment planning.

Authors:  Issam El Naqa; Deshan Yang; Aditya Apte; Divya Khullar; Sasa Mutic; Jie Zheng; Jeffrey D Bradley; Perry Grigsby; Joseph O Deasy
Journal:  Med Phys       Date:  2007-12       Impact factor: 4.071

10.  Influence of reconstruction settings on the performance of adaptive thresholding algorithms for FDG-PET image segmentation in radiotherapy planning.

Authors:  Roberta Matheoud; Patrizia Della Monica; Gianfranco Loi; Luca Vigna; Marco Krengli; Eugenio Inglese; Marco Brambilla
Journal:  J Appl Clin Med Phys       Date:  2011-01-30       Impact factor: 2.102

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  39 in total

1.  IMPROVING TUMOR CO-SEGMENTATION ON PET-CT IMAGES WITH 3D CO-MATTING.

Authors:  Zisha Zhong; Yusung Kim; Leixin Zhou; Kristin Plichta; Bryan Allen; John Buatti; Xiaodong Wu
Journal:  Proc IEEE Int Symp Biomed Imaging       Date:  2018-05-24

Review 2.  Computerized PET/CT image analysis in the evaluation of tumour response to therapy.

Authors:  W Lu; J Wang; H H Zhang
Journal:  Br J Radiol       Date:  2015-02-27       Impact factor: 3.039

3.  An enhanced random walk algorithm for delineation of head and neck cancers in PET studies.

Authors:  Alessandro Stefano; Salvatore Vitabile; Giorgio Russo; Massimo Ippolito; Maria Gabriella Sabini; Daniele Sardina; Orazio Gambino; Roberto Pirrone; Edoardo Ardizzone; Maria Carla Gilardi
Journal:  Med Biol Eng Comput       Date:  2016-09-16       Impact factor: 2.602

4.  Joint solution for PET image segmentation, denoising, and partial volume correction.

Authors:  Ziyue Xu; Mingchen Gao; Georgios Z Papadakis; Brian Luna; Sanjay Jain; Daniel J Mollura; Ulas Bagci
Journal:  Med Image Anal       Date:  2018-03-28       Impact factor: 8.545

5.  Simultaneous cosegmentation of tumors in PET-CT images using deep fully convolutional networks.

Authors:  Zisha Zhong; Yusung Kim; Kristin Plichta; Bryan G Allen; Leixin Zhou; John Buatti; Xiaodong Wu
Journal:  Med Phys       Date:  2019-01-04       Impact factor: 4.071

6.  Multi-surface and multi-field co-segmentation of 3-D retinal optical coherence tomography.

Authors:  Hrvoje Bogunovic; Milan Sonka; Young H Kwon; Pavlina Kemp; Michael D Abramoff; Xiaodong Wu
Journal:  IEEE Trans Med Imaging       Date:  2014-07-09       Impact factor: 10.048

Review 7.  Progress in Fully Automated Abdominal CT Interpretation.

Authors:  Ronald M Summers
Journal:  AJR Am J Roentgenol       Date:  2016-04-21       Impact factor: 3.959

8.  Classification and evaluation strategies of auto-segmentation approaches for PET: Report of AAPM task group No. 211.

Authors:  Mathieu Hatt; John A Lee; Charles R Schmidtlein; Issam El Naqa; Curtis Caldwell; Elisabetta De Bernardi; Wei Lu; Shiva Das; Xavier Geets; Vincent Gregoire; Robert Jeraj; Michael P MacManus; Osama R Mawlawi; Ursula Nestle; Andrei B Pugachev; Heiko Schöder; Tony Shepherd; Emiliano Spezi; Dimitris Visvikis; Habib Zaidi; Assen S Kirov
Journal:  Med Phys       Date:  2017-05-18       Impact factor: 4.071

Review 9.  Contrast-enhanced dual mode imaging: photoacoustic imaging plus more.

Authors:  Sungjo Park; Unsang Jung; Seunghyun Lee; Donghyun Lee; Chulhong Kim
Journal:  Biomed Eng Lett       Date:  2017-01-23

10.  Variational PET/CT Tumor Co-segmentation Integrated with PET Restoration.

Authors:  Laquan Li; Wei Lu; Shan Tan
Journal:  IEEE Trans Radiat Plasma Med Sci       Date:  2019-04-16
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