Literature DB >> 31772021

Probing transient excited states of the bacterial cell division regulator MinE by relaxation dispersion NMR spectroscopy.

Mengli Cai1, Ying Huang2, Yang Shen1, Min Li2, Michiyo Mizuuchi2, Rodolfo Ghirlando2, Kiyoshi Mizuuchi3, G Marius Clore4.   

Abstract

Bacterial MinD and MinE form a standing oscillatory wave which positions the cell division inhibitor MinC, that binds MinD, everywhere on the membrane except at the midpoint of the cell, ensuring midcell positioning of the cytokinetic septum. During this process MinE undergoes fold switching as it interacts with different partners. We explore the exchange dynamics between major and excited states of the MinE dimer in 3 forms using 15N relaxation dispersion NMR: the full-length protein (6-stranded β-sheet sandwiched between 4 helices) representing the resting state; a 10-residue N-terminal deletion (Δ10) mimicking the membrane-binding competent state where the N-terminal helix is detached to interact with membrane; and N-terminal deletions of either 30 (Δ30) or 10 residues with an I24N mutation (Δ10/I24N), in which the β1-strands at the dimer interface are extruded and available to bind MinD, leaving behind a 4-stranded β-sheet. Full-length MinE samples 2 "excited" states: The first is similar to a full-length/Δ10 heterodimer; the second, also sampled by Δ10, is either similar to or well along the pathway toward the 4-stranded β-sheet form. Both Δ30 and Δ10/I24N sample 2 excited species: The first may involve destabilization of the β3- and β3'-strands at the dimer interface; changes in the second are more extensive, involving further disruption of secondary structure, possibly representing an ensemble of states on the pathway toward restoration of the resting state. The quantitative information on MinE conformational dynamics involving these excited states is crucial for understanding the oscillation pattern self-organization by MinD-MinE interaction dynamics on the membrane.

Entities:  

Keywords:  excited states; fold switching; millisecond exchange dynamics; protein conformational dynamics; self-organizing standing wave

Mesh:

Substances:

Year:  2019        PMID: 31772021      PMCID: PMC6925984          DOI: 10.1073/pnas.1915948116

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  30 in total

1.  Structural basis for the topological specificity function of MinE.

Authors:  G F King; Y L Shih; M W Maciejewski; N P Bains; B Pan; S L Rowland; G P Mullen; L I Rothfield
Journal:  Nat Struct Biol       Date:  2000-11

2.  Mapping the MinE site involved in interaction with the MinD division site selection protein of Escherichia coli.

Authors:  Lu-Yan Ma; Glenn King; Lawrence Rothfield
Journal:  J Bacteriol       Date:  2003-08       Impact factor: 3.490

3.  Appropriation of the MinD protein-interaction motif by the dimeric interface of the bacterial cell division regulator MinE.

Authors:  Houman Ghasriani; Thierry Ducat; Chris T Hart; Fatima Hafizi; Nina Chang; Ali Al-Baldawi; Saud H Ayed; Patrik Lundström; Jo-Anne R Dillon; Natalie K Goto
Journal:  Proc Natl Acad Sci U S A       Date:  2010-10-11       Impact factor: 11.205

4.  The dynamic energy landscape of dihydrofolate reductase catalysis.

Authors:  David D Boehr; Dan McElheny; H Jane Dyson; Peter E Wright
Journal:  Science       Date:  2006-09-15       Impact factor: 47.728

Review 5.  Probing invisible, low-populated States of protein molecules by relaxation dispersion NMR spectroscopy: an application to protein folding.

Authors:  Dmitry M Korzhnev; Lewis E Kay
Journal:  Acc Chem Res       Date:  2008-02-15       Impact factor: 22.384

Review 6.  At the Heart of Bacterial Cytokinesis: The Z Ring.

Authors:  Shishen Du; Joe Lutkenhaus
Journal:  Trends Microbiol       Date:  2019-06-03       Impact factor: 17.079

7.  Visualizing transient dark states by NMR spectroscopy.

Authors:  Nicholas J Anthis; G Marius Clore
Journal:  Q Rev Biophys       Date:  2015-02       Impact factor: 5.318

8.  Differential affinities of MinD and MinE to anionic phospholipid influence Min patterning dynamics in vitro.

Authors:  Anthony G Vecchiarelli; Min Li; Michiyo Mizuuchi; Kiyoshi Mizuuchi
Journal:  Mol Microbiol       Date:  2014-07-01       Impact factor: 3.501

Review 9.  Splitsville: structural and functional insights into the dynamic bacterial Z ring.

Authors:  Daniel P Haeusser; William Margolin
Journal:  Nat Rev Microbiol       Date:  2016-04-04       Impact factor: 60.633

10.  Direct observation of ultrafast large-scale dynamics of an enzyme under turnover conditions.

Authors:  Haim Yuval Aviram; Menahem Pirchi; Hisham Mazal; Yoav Barak; Inbal Riven; Gilad Haran
Journal:  Proc Natl Acad Sci U S A       Date:  2018-03-12       Impact factor: 11.205

View more
  6 in total

1.  AlphaFold2 fails to predict protein fold switching.

Authors:  Devlina Chakravarty; Lauren L Porter
Journal:  Protein Sci       Date:  2022-06       Impact factor: 6.993

2.  A sequence-based method for predicting extant fold switchers that undergo α-helix ↔ β-strand transitions.

Authors:  Soumya Mishra; Loren L Looger; Lauren L Porter
Journal:  Biopolymers       Date:  2021-09-09       Impact factor: 2.240

3.  A simple and cost-effective protocol for high-yield expression of deuterated and selectively isoleucine/leucine/valine methyl protonated proteins in Escherichia coli grown in shaker flasks.

Authors:  Mengli Cai; Ying Huang; John Lloyd; Robert Craigie; G Marius Clore
Journal:  J Biomol NMR       Date:  2021-02-04       Impact factor: 2.835

4.  An S/T motif controls reversible oligomerization of the Hsp40 chaperone DNAJB6b through subtle reorganization of a β sheet backbone.

Authors:  Theodoros K Karamanos; Vitali Tugarinov; G Marius Clore
Journal:  Proc Natl Acad Sci U S A       Date:  2020-11-16       Impact factor: 12.779

5.  A high-throughput predictive method for sequence-similar fold switchers.

Authors:  Allen K Kim; Loren L Looger; Lauren L Porter
Journal:  Biopolymers       Date:  2021-01-19       Impact factor: 2.240

Review 6.  Functional and Regulatory Roles of Fold-Switching Proteins.

Authors:  Allen K Kim; Lauren L Porter
Journal:  Structure       Date:  2020-11-10       Impact factor: 5.006

  6 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.