Literature DB >> 33176159

Functional and Regulatory Roles of Fold-Switching Proteins.

Allen K Kim1, Lauren L Porter2.   

Abstract

Fold-switching proteins respond to cellular stimuli by remodeling their secondary structures and changing their functions. Whereas several previous reviews have focused on various structural, physical-chemical, and evolutionary aspects of this newly emerging class of proteins, this minireview focuses on how fold switching modulates protein function and regulates biological processes. It first compares and contrasts fold switchers with other known types of proteins. Second, it presents examples of how various proteins can change their functions through fold switching. Third, it demonstrates that fold switchers can regulate biological processes by discussing two proteins, RfaH and KaiB, whose dramatic secondary structure remodeling events directly affect gene expression and a circadian clock, respectively. Finally, this minireview discusses how the field of protein fold switching might advance. Published by Elsevier Ltd.

Entities:  

Keywords:  fold-switching proteins; metamorphic proteins; protein folding; protein function; protein structure

Mesh:

Substances:

Year:  2020        PMID: 33176159      PMCID: PMC8184262          DOI: 10.1016/j.str.2020.10.006

Source DB:  PubMed          Journal:  Structure        ISSN: 0969-2126            Impact factor:   5.006


  74 in total

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Journal:  J Biol Chem       Date:  2003-11-12       Impact factor: 5.157

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Authors:  Vikram Vijayan; Rick Zuzow; Erin K O'Shea
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3.  Biochemistry. Metamorphic proteins.

Authors:  Alexey G Murzin
Journal:  Science       Date:  2008-06-27       Impact factor: 47.728

4.  Secondary structure reshuffling modulates glycosyltransferase function at the membrane.

Authors:  David Giganti; David Albesa-Jové; Saioa Urresti; Ane Rodrigo-Unzueta; Mariano A Martínez; Natalia Comino; Nathalie Barilone; Marco Bellinzoni; Alexandre Chenal; Marcelo E Guerin; Pedro M Alzari
Journal:  Nat Chem Biol       Date:  2014-11-17       Impact factor: 15.040

5.  Quinary structure modulates protein stability in cells.

Authors:  William B Monteith; Rachel D Cohen; Austin E Smith; Emilio Guzman-Cisneros; Gary J Pielak
Journal:  Proc Natl Acad Sci U S A       Date:  2015-01-26       Impact factor: 11.205

6.  Two Escherichia coli chromosomal cistrons, sfrA and sfrB, which are needed for expression of F factor tra functions.

Authors:  L Beutin; M Achtman
Journal:  J Bacteriol       Date:  1979-09       Impact factor: 3.490

7.  Flexible nets: disorder and induced fit in the associations of p53 and 14-3-3 with their partners.

Authors:  Christopher J Oldfield; Jingwei Meng; Jack Y Yang; Mary Qu Yang; Vladimir N Uversky; A Keith Dunker
Journal:  BMC Genomics       Date:  2008       Impact factor: 3.969

8.  Cryo-electron microscopy structures of the SARS-CoV spike glycoprotein reveal a prerequisite conformational state for receptor binding.

Authors:  Miao Gui; Wenfei Song; Haixia Zhou; Jingwei Xu; Silian Chen; Ye Xiang; Xinquan Wang
Journal:  Cell Res       Date:  2016-12-23       Impact factor: 25.617

9.  Reversible fold-switching controls the functional cycle of the antitermination factor RfaH.

Authors:  Philipp Konrad Zuber; Kristian Schweimer; Paul Rösch; Irina Artsimovitch; Stefan H Knauer
Journal:  Nat Commun       Date:  2019-02-11       Impact factor: 14.919

10.  Cryo-EM structure and inhibitor design of human IAPP (amylin) fibrils.

Authors:  Qin Cao; David R Boyer; Michael R Sawaya; Peng Ge; David S Eisenberg
Journal:  Nat Struct Mol Biol       Date:  2020-06-15       Impact factor: 15.369

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  6 in total

1.  AlphaFold2 fails to predict protein fold switching.

Authors:  Devlina Chakravarty; Lauren L Porter
Journal:  Protein Sci       Date:  2022-06       Impact factor: 6.993

2.  A sequence-based method for predicting extant fold switchers that undergo α-helix ↔ β-strand transitions.

Authors:  Soumya Mishra; Loren L Looger; Lauren L Porter
Journal:  Biopolymers       Date:  2021-09-09       Impact factor: 2.240

3.  Predictable fold switching by the SARS-CoV-2 protein ORF9b.

Authors:  Lauren L Porter
Journal:  Protein Sci       Date:  2021-05-10       Impact factor: 6.993

4.  Many dissimilar NusG protein domains switch between α-helix and β-sheet folds.

Authors:  Lauren L Porter; Allen K Kim; Swechha Rimal; Loren L Looger; Ananya Majumdar; Brett D Mensh; Mary R Starich; Marie-Paule Strub
Journal:  Nat Commun       Date:  2022-07-01       Impact factor: 17.694

5.  Evolution avoids a pathological stabilizing interaction in the immune protein S100A9.

Authors:  Joseph L Harman; Patrick N Reardon; Shawn M Costello; Gus D Warren; Sophia R Phillips; Patrick J Connor; Susan Marqusee; Michael J Harms
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6.  Metamorphic Protein Folding Encodes Multiple Anti-Candida Mechanisms in XCL1.

Authors:  Acacia F Dishman; Jie He; Brian F Volkman; Anna R Huppler
Journal:  Pathogens       Date:  2021-06-17
  6 in total

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