Literature DB >> 31734746

CRISPR off-targets: a question of context.

Maximilian Haeussler1.   

Abstract

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Mesh：

Year:  2019        PMID： 31734746      PMCID： PMC7056574          DOI： 10.1007/s10565-019-09497-1

Source DB:  PubMed          Journal:  Cell Biol Toxicol        ISSN： 0742-2091            Impact factor:   6.691


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  18 in total

1.  Cpf1 is a single RNA-guided endonuclease of a class 2 CRISPR-Cas system.

Authors:  Bernd Zetsche; Jonathan S Gootenberg; Omar O Abudayyeh; Ian M Slaymaker; Kira S Makarova; Patrick Essletzbichler; Sara E Volz; Julia Joung; John van der Oost; Aviv Regev; Eugene V Koonin; Feng Zhang
Journal:  Cell       Date:  2015-09-25       Impact factor: 41.582

2.  Digenome-seq web tool for profiling CRISPR specificity.

Authors:  Jeongbin Park; Liam Childs; Daesik Kim; Gue-Ho Hwang; Sunghyun Kim; Sang-Tae Kim; Jin-Soo Kim; Sangsu Bae
Journal:  Nat Methods       Date:  2017-05-30       Impact factor: 28.547

3.  Selection-free genome editing of the sickle mutation in human adult hematopoietic stem/progenitor cells.

Authors:  Mark A DeWitt; Wendy Magis; Nicolas L Bray; Tianjiao Wang; Jennifer R Berman; Fabrizia Urbinati; Seok-Jin Heo; Therese Mitros; Denise P Muñoz; Dario Boffelli; Donald B Kohn; Mark C Walters; Dana Carroll; David I K Martin; Jacob E Corn
Journal:  Sci Transl Med       Date:  2016-10-12       Impact factor: 17.956

4.  CRISPR off-target analysis in genetically engineered rats and mice.

Authors:  Keith R Anderson; Maximilian Haeussler; Colin Watanabe; Vasantharajan Janakiraman; Jessica Lund; Zora Modrusan; Jeremy Stinson; Qixin Bei; Andrew Buechler; Charles Yu; Sobha R Thamminana; Lucinda Tam; Michael-Anne Sowick; Tuija Alcantar; Natasha O'Neil; Jinjie Li; Linda Ta; Lisa Lima; Merone Roose-Girma; Xin Rairdan; Steffen Durinck; Søren Warming
Journal:  Nat Methods       Date:  2018-05-21       Impact factor: 28.547

5.  Unbiased detection of CRISPR off-targets in vivo using DISCOVER-Seq.

Authors:  Beeke Wienert; Stacia K Wyman; Christopher D Richardson; Charles D Yeh; Pinar Akcakaya; Michelle J Porritt; Michaela Morlock; Jonathan T Vu; Katelynn R Kazane; Hannah L Watry; Luke M Judge; Bruce R Conklin; Marcello Maresca; Jacob E Corn
Journal:  Science       Date:  2019-04-18       Impact factor: 47.728

6.  DNA targeting specificity of RNA-guided Cas9 nucleases.

Authors:  Patrick D Hsu; David A Scott; Joshua A Weinstein; F Ann Ran; Silvana Konermann; Vineeta Agarwala; Yinqing Li; Eli J Fine; Xuebing Wu; Ophir Shalem; Thomas J Cradick; Luciano A Marraffini; Gang Bao; Feng Zhang
Journal:  Nat Biotechnol       Date:  2013-07-21       Impact factor: 54.908

7.  Repair of double-strand breaks induced by CRISPR-Cas9 leads to large deletions and complex rearrangements.

Authors:  Michael Kosicki; Kärt Tomberg; Allan Bradley
Journal:  Nat Biotechnol       Date:  2018-07-16       Impact factor: 54.908

8.  GUIDE-seq enables genome-wide profiling of off-target cleavage by CRISPR-Cas nucleases.

Authors:  Shengdar Q Tsai; Zongli Zheng; Nhu T Nguyen; Matthew Liebers; Ved V Topkar; Vishal Thapar; Nicolas Wyvekens; Cyd Khayter; A John Iafrate; Long P Le; Martin J Aryee; J Keith Joung
Journal:  Nat Biotechnol       Date:  2014-12-16       Impact factor: 54.908

9.  Evaluation of off-target and on-target scoring algorithms and integration into the guide RNA selection tool CRISPOR.

Authors:  Maximilian Haeussler; Kai Schönig; Hélène Eckert; Alexis Eschstruth; Joffrey Mianné; Jean-Baptiste Renaud; Sylvie Schneider-Maunoury; Alena Shkumatava; Lydia Teboul; Jim Kent; Jean-Stephane Joly; Jean-Paul Concordet
Journal:  Genome Biol       Date:  2016-07-05       Impact factor: 13.583

10.  Crossing enhanced and high fidelity SpCas9 nucleases to optimize specificity and cleavage.

Authors:  Péter István Kulcsár; András Tálas; Krisztina Huszár; Zoltán Ligeti; Eszter Tóth; Nóra Weinhardt; Elfrieda Fodor; Ervin Welker
Journal:  Genome Biol       Date:  2017-10-06       Impact factor: 13.583
View more
  10 in total

1.  HaloChIP-seq for Antibody-Independent Mapping of Mouse Transcription Factor Cistromes in vivo.

Authors:  Ann Louise Hunter; Antony D Adamson; Toryn M Poolman; Magdalena Grudzien; Andrew S I Loudon; David W Ray; David A Bechtold
Journal:  Bio Protoc       Date:  2022-07-05

Review 2.  Improvements in Gene Editing Technology Boost Its Applications in Livestock.

Authors:  Iuri Viotti Perisse; Zhiqiang Fan; Galina N Singina; Kenneth L White; Irina A Polejaeva
Journal:  Front Genet       Date:  2021-01-08       Impact factor: 4.599

3.  One-Step Generation of Multiple Gene-Edited Pigs by Electroporation of the CRISPR/Cas9 System into Zygotes to Reduce Xenoantigen Biosynthesis.

Authors:  Fuminori Tanihara; Maki Hirata; Nhien Thi Nguyen; Osamu Sawamoto; Takeshi Kikuchi; Takeshige Otoi
Journal:  Int J Mol Sci       Date:  2021-02-24       Impact factor: 5.923

4.  Amplification-free long-read sequencing reveals unforeseen CRISPR-Cas9 off-target activity.

Authors:  Ida Höijer; Josefin Johansson; Sanna Gudmundsson; Chen-Shan Chin; Ignas Bunikis; Susana Häggqvist; Anastasia Emmanouilidou; Maria Wilbe; Marcel den Hoed; Marie-Louise Bondeson; Lars Feuk; Ulf Gyllensten; Adam Ameur
Journal:  Genome Biol       Date:  2020-12-01       Impact factor: 13.583

5.  Mouse models characterize GNAO1 encephalopathy as a neurodevelopmental disorder leading to motor anomalies: from a severe G203R to a milder C215Y mutation.

Authors:  Denis Silachev; Alexey Koval; Mikhail Savitsky; Guru Padmasola; Charles Quairiaux; Fabrizio Thorel; Vladimir L Katanaev
Journal:  Acta Neuropathol Commun       Date:  2022-01-28       Impact factor: 7.801

Review 6.  An Outlook on Global Regulatory Landscape for Genome-Edited Crops.

Authors:  Aftab Ahmad; Nayla Munawar; Zulqurnain Khan; Alaa T Qusmani; Sultan Habibullah Khan; Amer Jamil; Sidra Ashraf; Muhammad Zubair Ghouri; Sabin Aslam; Muhammad Salman Mubarik; Ahmad Munir; Qaiser Sultan; Kamel A Abd-Elsalam; Sameer H Qari
Journal:  Int J Mol Sci       Date:  2021-10-29       Impact factor: 5.923

7.  Discovery in clinical and translational medicine.

Authors:  Diane C Wang; Xiangdong Wang
Journal:  Clin Transl Med       Date:  2021-10

Review 8.  The application of CRISPR /Cas mediated gene editing in synthetic biology: Challenges and optimizations.

Authors:  Wenqian Li; Can Huang; Jingyu Chen
Journal:  Front Bioeng Biotechnol       Date:  2022-08-25

Review 9.  Pipeline for the Generation and Characterization of Transgenic Human Pluripotent Stem Cells Using the CRISPR/Cas9 Technology.

Authors:  Joffrey Mianné; Chloé Bourguignon; Chloé Nguyen Van; Mathieu Fieldès; Amel Nasri; Said Assou; John De Vos
Journal:  Cells       Date:  2020-05-25       Impact factor: 6.600

10.  A porcine model of phenylketonuria generated by CRISPR/Cas9 genome editing.

Authors:  Erik A Koppes; Bethany K Redel; Marie A Johnson; Kristen J Skvorak; Lina Ghaloul-Gonzalez; Megan E Yates; Dale W Lewis; Susanne M Gollin; Yijen L Wu; Shawn E Christ; Martine Yerle; Angela Leshinski; Lee D Spate; Joshua A Benne; Stephanie L Murphy; Melissa S Samuel; Eric M Walters; Sarah A Hansen; Kevin D Wells; Uta Lichter-Konecki; Robert A Wagner; Joseph T Newsome; Steven F Dobrowolski; Jerry Vockley; Randall S Prather; Robert D Nicholls
Journal:  JCI Insight       Date:  2020-10-15
  10 in total

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