Literature DB >> 28557982

Digenome-seq web tool for profiling CRISPR specificity.

Jeongbin Park1, Liam Childs1, Daesik Kim2, Gue-Ho Hwang3, Sunghyun Kim2, Sang-Tae Kim2, Jin-Soo Kim2,4, Sangsu Bae3,5.   

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Year:  2017        PMID： 28557982     DOI： 10.1038/nmeth.4262

Source DB:  PubMed          Journal:  Nat Methods        ISSN： 1548-7091            Impact factor:   28.547


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  4 in total

1.  Digenome-seq: genome-wide profiling of CRISPR-Cas9 off-target effects in human cells.

Authors:  Daesik Kim; Sangsu Bae; Jeongbin Park; Eunji Kim; Seokjoong Kim; Hye Ryeong Yu; Jinha Hwang; Jong-Il Kim; Jin-Soo Kim
Journal:  Nat Methods       Date:  2015-02-09       Impact factor: 28.547

2.  Genome-wide analysis reveals specificities of Cpf1 endonucleases in human cells.

Authors:  Daesik Kim; Jungeun Kim; Junho K Hur; Kyung Wook Been; Sun-Heui Yoon; Jin-Soo Kim
Journal:  Nat Biotechnol       Date:  2016-06-06       Impact factor: 54.908

3.  Genome-wide target specificities of CRISPR-Cas9 nucleases revealed by multiplex Digenome-seq.

Authors:  Daesik Kim; Sojung Kim; Sunghyun Kim; Jeongbin Park; Jin-Soo Kim
Journal:  Genome Res       Date:  2016-01-19       Impact factor: 9.043

4.  Ensembl 2017.

Authors:  Bronwen L Aken; Premanand Achuthan; Wasiu Akanni; M Ridwan Amode; Friederike Bernsdorff; Jyothish Bhai; Konstantinos Billis; Denise Carvalho-Silva; Carla Cummins; Peter Clapham; Laurent Gil; Carlos García Girón; Leo Gordon; Thibaut Hourlier; Sarah E Hunt; Sophie H Janacek; Thomas Juettemann; Stephen Keenan; Matthew R Laird; Ilias Lavidas; Thomas Maurel; William McLaren; Benjamin Moore; Daniel N Murphy; Rishi Nag; Victoria Newman; Michael Nuhn; Chuang Kee Ong; Anne Parker; Mateus Patricio; Harpreet Singh Riat; Daniel Sheppard; Helen Sparrow; Kieron Taylor; Anja Thormann; Alessandro Vullo; Brandon Walts; Steven P Wilder; Amonida Zadissa; Myrto Kostadima; Fergal J Martin; Matthieu Muffato; Emily Perry; Magali Ruffier; Daniel M Staines; Stephen J Trevanion; Fiona Cunningham; Andrew Yates; Daniel R Zerbino; Paul Flicek
Journal:  Nucleic Acids Res       Date:  2016-11-28       Impact factor: 16.971
  4 in total
  8 in total

1.  Integrated design, execution, and analysis of arrayed and pooled CRISPR genome-editing experiments.

Authors:  Matthew C Canver; Maximilian Haeussler; Daniel E Bauer; Stuart H Orkin; Neville E Sanjana; Ophir Shalem; Guo-Cheng Yuan; Feng Zhang; Jean-Paul Concordet; Luca Pinello
Journal:  Nat Protoc       Date:  2018-04-12       Impact factor: 13.491

2.  Identifying genome-wide off-target sites of CRISPR RNA-guided nucleases and deaminases with Digenome-seq.

Authors:  Daesik Kim; Beum-Chang Kang; Jin-Soo Kim
Journal:  Nat Protoc       Date:  2021-01-18       Impact factor: 13.491

3.  CRISPR off-targets: a question of context.

Authors:  Maximilian Haeussler
Journal:  Cell Biol Toxicol       Date:  2019-11-16       Impact factor: 6.691

4.  Human genetic variation alters CRISPR-Cas9 on- and off-targeting specificity at therapeutically implicated loci.

Authors:  Samuel Lessard; Laurent Francioli; Jessica Alfoldi; Jean-Claude Tardif; Patrick T Ellinor; Daniel G MacArthur; Guillaume Lettre; Stuart H Orkin; Matthew C Canver
Journal:  Proc Natl Acad Sci U S A       Date:  2017-12-11       Impact factor: 11.205

Review 5.  Innovative Precision Gene-Editing Tools in Personalized Cancer Medicine.

Authors:  Xiaofeng Dai; Pilar Blancafort; Peiyu Wang; Agustin Sgro; Erik W Thompson; Kostya Ken Ostrikov
Journal:  Adv Sci (Weinh)       Date:  2020-04-23       Impact factor: 16.806

6.  Illuminating the genome-wide activity of genome editors for safe and effective therapeutics.

Authors:  Yong Cheng; Shengdar Q Tsai
Journal:  Genome Biol       Date:  2018-12-22       Impact factor: 13.583

7.  Genome-wide profiling of adenine base editor specificity by EndoV-seq.

Authors:  Puping Liang; Xiaowei Xie; Shengyao Zhi; Hongwei Sun; Xiya Zhang; Yu Chen; Yuxi Chen; Yuanyan Xiong; Wenbin Ma; Dan Liu; Junjiu Huang; Zhou Songyang
Journal:  Nat Commun       Date:  2019-01-08       Impact factor: 14.919

Review 8.  Computational approaches for effective CRISPR guide RNA design and evaluation.

Authors:  Guanqing Liu; Yong Zhang; Tao Zhang
Journal:  Comput Struct Biotechnol J       Date:  2019-11-29       Impact factor: 7.271
  8 in total

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