| Literature DB >> 31680790 |
Raquel Roldán1, Karel Hernández1, Jesús Joglar1, Jordi Bujons1, Teodor Parella2, Wolf-Dieter Fessner3, Pere Clapés1.
Abstract
Nitrogen heterocycles are structural motifs found in many bioactive natural products and of utmost importance in pharmaceutical drug development. In this work, a stereoselective synthesis of functionalized N-heterocycles was accomplished in two steps, comprising the biocatalytic aldol addition of ethanal and simple aliphatic ketones such as propanone, butanone, 3-pentanone, cyclobutanone, and cyclopentanone to N-Cbz-protected aminoaldehydes using engineered variants of d-fructose-6-phosphate aldolase from Escherichia coli (FSA) or 2-deoxy-d-ribose-5-phosphate aldolase from Thermotoga maritima (DERA Tma ) as catalysts. FSA catalyzed most of the additions of ketones while DERA Tma was restricted to ethanal and propanone. Subsequent treatment with hydrogen in the presence of palladium over charcoal, yielded low-level oxygenated N-heterocyclic derivatives of piperidine, pyrrolidine and N-bicyclic structures bearing fused cyclobutane and cyclopentane rings, with stereoselectivities of 96-98 ee and 97:3 dr in isolated yields ranging from 35 to 79%.Entities:
Keywords: Aldol reaction; Aldolases; Biocatalysis; Nitrogen heterocycles; Reductive amination
Year: 2019 PMID: 31680790 PMCID: PMC6813633 DOI: 10.1002/adsc.201801530
Source DB: PubMed Journal: Adv Synth Catal ISSN: 1615-4150 Impact factor: 5.837
Figure 1Panel of nucleophiles 1 a–g and electrophiles 2 a–c assayed for enzymatic cross‐aldolization.
Figure 2Results of conversion to aldol adduct from the screening of FSA variants and DERA as catalysts for the aldol addition of nucleophiles 1 a–g to electrophiles 2 a–c. Conversions (mol %) at 24 h were determined by HPLC analysis using the external standard methodology. Conditions: [1 a]=100 mM; [1 b]=2.6 M (15% v/v), [1 c]=0.60 M, [1 d]=0.47 M, [1 e]=0.68 M, [1 f]=0.56 M, and [1 g]=0.48 M (5% v/v; in 1 c–g), [2]=80 mM, except for the addition if 1 a to R‐2 c and S‐2 c catalyzed by DERA where [1 a]=[2 c]=100 mM. Reactions were conducted in aqueous 50 mM triethanolamine buffer pH 8 at 25 °C. FSA qm=FSA quintuple mutant=FSA L107Y/A129G/R134 S/A165G/S166G. A complete list of all FSA variants assayed can be found in SI.
Preparative scale FSA‐ and DERA‐catalyzed aldol additions of 1 a–f to N‐Cbz‐3‐aminopropanal (2 a).
|
| |||||||
|---|---|---|---|---|---|---|---|
|
Entry |
Biocatalyst |
Nu |
Product |
Aldol adduct formed,[a] % |
Yield,[b] % |
Aldol addition er or dr, % |
Reductive amination product,[c] dr |
|
1 |
FSA qm |
|
|
85 |
45 |
–[e] |
– |
|
2 |
DERA |
|
|
77 |
25 |
–[e] |
– |
|
3 |
FSA D6 N |
|
|
94 |
85 |
98:2[f] |
|
|
4 |
DERA |
|
|
70 |
47 |
92:8[f] |
– |
|
5 |
FSA D6E |
|
|
78 |
48 |
86:14[g] |
|
|
6 |
FSA D6E |
|
|
71 |
35 |
>97:3[h,i] |
|
|
7 |
FSA D6L |
|
|
56 |
46 |
80:20[i] |
|
|
8 |
FSA A165G |
|
|
75 |
65 |
67:33[i] |
|
[a] Values determined by HPLC analysis of preparative scale reactions.
[b] Isolated yield of aldol adduct.
[c] Diastereomer ratio determined by NMR.
[d] Aldol adduct isolated as cyclic hemiaminal in equilibrium with its open form.
[e] er not determined; optical rotation: FSA qm [α]D 20=+8.5 (c=2.1 in MeOH); DERA [α]D 20 =+4.6 (c=0.69 in MeOH).
[f] er determined by chiral HPLC, referenced to a racemic sample prepared by chemical synthesis (see SI).
[g] Inferred from the reductive amination products 6:7.
[h] No other diastereomers were detected by NMR analysis.
[i] dr of the aldol adduct determined by NMR analysis. FSA qm=FSA L107Y/A129G/R134S/A165G/S166G.
Nu: Nucleophile. Green asterisk indicates the stereogenic center formed after reductive amination.
Scheme 3DERA‐catalyzed aldol addition of 1 a to S‐2 c with an excess of 1 a leading to the formation of 3R,5R‐dihydroxyhexanal and formation of 37 during reductive amination.
Preparative scale FSA‐ and DERA‐catalyzed aldol additions of 1 b–f to N‐Cbz‐2‐aminoethanal (2 b).
|
| |||||||
|---|---|---|---|---|---|---|---|
|
Entry |
Biocatalyst |
Nu |
Aldol adduct |
Aldol adduct formed,[a] % |
Isolated yield,[b] % |
Aldol addition er or dr,% |
Reductive amination products,[c] dr |
|
1 |
FSA A165G |
|
|
95 |
35 |
99:1[d] |
|
|
2 |
DERA |
|
|
85 |
30 |
95:5[d] |
– |
|
3 |
FSA A165G |
|
|
60 |
28 |
88:12 |
|
|
4 |
FSA D6T |
|
|
47 |
30 |
87:13 |
|
|
5 |
FSA A165G |
|
|
87 |
37 |
>95:5[e] |
–[g] |
|
6 |
FSA A165G |
|
|
50 |
38 |
50:50[e,f] |
|
[a] Values obtained at preparative scale and determined by HPLC.
[b] Isolated yield of aldol adduct.
[c] dr: diasteromeric ratio determined by NMR.
[d] er determined by chiral HPLC, a racemic sample was obtained by non‐stereoselective chemical methods (see SI).
[e] dr of the aldol adduct determined by NMR.
[f] The 50:50 diastereomeric mixture obtained in the aldol addition was purified by column chromatography. Two fractions were obtained: one of pure 15 f and another one of a 15 f:16 f 33:67 mixture in order to characterize both N‐heterocycles. The reductive amination was carried out on the 15 f:16 f 33:67 mixture.
[g] The reductive amination produced a complex mixture of products, which could not be assigned to any structure.
Nu: Nucleophile. Green asterisk indicates the stereogenic center formed after reductive amination.
Scheme 1Product distribution in the aldol addition of 1 c to 2 a and 2 b catalyzed by FSA D6E and A165G variants.
Scheme 2Product distribution in the aldol addition of 1 e to 2 a and 2 b catalyzed by FSA D6E and A165G variants.
Preparative scale DERA‐catalyzed aldol addition of 1 a and 1 b to (S)‐ and (R)‐N‐Cbz‐2‐alaninal (S‐2 c and R‐2 c).
|
| ||||||
|---|---|---|---|---|---|---|
|
Nu |
E |
Aldol adduct formed,[a] % |
Yield,[b]% |
Aldol adduct |
dr,[c] % |
Reductive amination product,[d] dr |
|
|
|
85[e] |
34[f] |
(4 |
>95:5 |
|
|
|
|
80[e] |
20[f] |
(4 |
>95:5 |
|
|
|
|
81 |
79 |
(4 |
>95:5 |
|
|
|
|
91 |
78 |
(4 |
77:23 |
|
[a] Determined by HPLC.
[b] Isolated yield of aldol adduct.
[c] dr: inferred from the reductive amination products.
[d] dr: diasteromeric ratio assessed by NMR.
[e] [1 a]=[E]=100 mM.
[f] Several purification column chromatography runs had to be performed to remove the trimerization product from enzymatic double addition of 1 a.
Nu=Nucleophile. E=Electrophile. Green asterisk indicates the stereogenic center formed after reductive amination.