Literature DB >> 31656959

Using Convolutional Neural Networks to Automatically Detect Eye-Blink Artifacts in Magnetoencephalography Without Resorting to Electrooculography.

Prabhat Garg1, Elizabeth Davenport1, Gowtham Murugesan1, Ben Wagner1, Christopher Whitlow2, Joseph Maldjian1, Albert Montillo1.   

Abstract

Magnetoencephelography (MEG) is a functional neuroimaging tool that records the magnetic fields induced by neuronal activity; however, signal from muscle activity often corrupts the data. Eye-blinks are one of the most common types of muscle artifact. They can be recorded by affixing eye proximal electrodes, as in electrooculography (EOG), however this complicates patient preparation and decreases comfort. Moreover, it can induce further muscular artifacts from facial twitching. We propose an EOG free, data driven approach. We begin with Independent Component Analysis (ICA), a well-known preprocessing approach that factors observed signal into statistically independent components. When applied to MEG, ICA can help separate neuronal components from non-neuronal ones, however, the components are randomly ordered. Thus, we develop a method to assign one of two labels, non-eye-blink or eye-blink, to each component. Our contributions are two-fold. First, we develop a 10-layer Convolutional Neural Network (CNN), which directly labels eye-blink artifacts. Second, we visualize the learned spatial features using attention mapping, to reveal what it has learned and bolster confidence in the method's ability to generalize to unseen data. We acquired 8-min, eyes open, resting state MEG from 44 subjects. We trained our method on the spatial maps from ICA of 14 subjects selected randomly with expertly labeled ground truth. We then tested on the remaining 30 subjects. Our approach achieves a test classification accuracy of 99.67%, sensitivity: 97.62%, specificity: 99.77%, and ROC AUC: 98.69%. We also show the learned spatial features correspond to those human experts typically use which corroborates our model's validity. This work (1) facilitates creation of fully automated processing pipelines in MEG that need to remove motion artifacts related to eye blinks, and (2) potentially obviates the use of additional EOG electrodes for the recording of eye-blinks in MEG studies.

Entities:  

Keywords:  Artifact; Automatic; CNN; Deep learning; EOG; Eye-Blink; MEG

Year:  2017        PMID: 31656959      PMCID: PMC6814159          DOI: 10.1007/978-3-319-66179-7_43

Source DB:  PubMed          Journal:  Med Image Comput Comput Assist Interv


  10 in total

Review 1.  The origin of extracellular fields and currents--EEG, ECoG, LFP and spikes.

Authors:  György Buzsáki; Costas A Anastassiou; Christof Koch
Journal:  Nat Rev Neurosci       Date:  2012-05-18       Impact factor: 34.870

2.  Boosting specificity of MEG artifact removal by weighted support vector machine.

Authors:  Fang Duan; Montri Phothisonothai; Mitsuru Kikuchi; Yuko Yoshimura; Yoshio Minabe; Kastumi Watanabe; Kazuyuki Aihara
Journal:  Conf Proc IEEE Eng Med Biol Soc       Date:  2013

3.  Signal-to-noise ratio of the MEG signal after preprocessing.

Authors:  Alicia Gonzalez-Moreno; Sara Aurtenetxe; Maria-Eugenia Lopez-Garcia; Francisco del Pozo; Fernando Maestu; Angel Nevado
Journal:  J Neurosci Methods       Date:  2013-11-04       Impact factor: 2.390

4.  Ocular and cardiac artifact rejection for real-time analysis in MEG.

Authors:  Lukas Breuer; Jürgen Dammers; Timothy P L Roberts; N Jon Shah
Journal:  J Neurosci Methods       Date:  2014-06-19       Impact factor: 2.390

5.  Abnormal white matter integrity related to head impact exposure in a season of high school varsity football.

Authors:  Elizabeth M Davenport; Christopher T Whitlow; Jillian E Urban; Mark A Espeland; Youngkyoo Jung; Daryl A Rosenbaum; Gerard A Gioia; Alexander K Powers; Joel D Stitzel; Joseph A Maldjian
Journal:  J Neurotrauma       Date:  2014-07-14       Impact factor: 5.269

6.  An information-maximization approach to blind separation and blind deconvolution.

Authors:  A J Bell; T J Sejnowski
Journal:  Neural Comput       Date:  1995-11       Impact factor: 2.026

7.  ICA-based artifact correction improves spatial localization of adaptive spatial filters in MEG.

Authors:  Zainab Fatima; Maher A Quraan; Natasa Kovacevic; Anthony Randal McIntosh
Journal:  Neuroimage       Date:  2013-04-18       Impact factor: 6.556

8.  Brainstorm: a user-friendly application for MEG/EEG analysis.

Authors:  François Tadel; Sylvain Baillet; John C Mosher; Dimitrios Pantazis; Richard M Leahy
Journal:  Comput Intell Neurosci       Date:  2011-04-13

9.  High-frequency brain activity and muscle artifacts in MEG/EEG: a review and recommendations.

Authors:  Suresh D Muthukumaraswamy
Journal:  Front Hum Neurosci       Date:  2013-04-15       Impact factor: 3.169

10.  Good practice for conducting and reporting MEG research.

Authors:  Joachim Gross; Sylvain Baillet; Gareth R Barnes; Richard N Henson; Arjan Hillebrand; Ole Jensen; Karim Jerbi; Vladimir Litvak; Burkhard Maess; Robert Oostenveld; Lauri Parkkonen; Jason R Taylor; Virginie van Wassenhove; Michael Wibral; Jan-Mathijs Schoffelen
Journal:  Neuroimage       Date:  2012-10-06       Impact factor: 6.556

  10 in total
  4 in total

1.  ABOT: an open-source online benchmarking tool for machine learning-based artefact detection and removal methods from neuronal signals.

Authors:  Marcos Fabietti; Mufti Mahmud; Ahmad Lotfi; M Shamim Kaiser
Journal:  Brain Inform       Date:  2022-09-01

2.  Implementation of a Convolutional Neural Network for Eye Blink Artifacts Removal From the Electroencephalography Signal.

Authors:  Marcin Jurczak; Marcin Kołodziej; Andrzej Majkowski
Journal:  Front Neurosci       Date:  2022-02-11       Impact factor: 4.677

3.  Splitting of the magnetic encephalogram into «brain» and «non-brain» physiological signals based on the joint analysis of frequency-pattern functional tomograms and magnetic resonance images.

Authors:  Rodolfo R Llinás; Stanislav Rykunov; Kerry D Walton; Anna Boyko; Mikhail Ustinin
Journal:  Front Neural Circuits       Date:  2022-08-26       Impact factor: 3.342

4.  MEGnet: Automatic ICA-based artifact removal for MEG using spatiotemporal convolutional neural networks.

Authors:  Alex H Treacher; Prabhat Garg; Elizabeth Davenport; Ryan Godwin; Amy Proskovec; Leonardo Guimaraes Bezerra; Gowtham Murugesan; Ben Wagner; Christopher T Whitlow; Joel D Stitzel; Joseph A Maldjian; Albert A Montillo
Journal:  Neuroimage       Date:  2021-07-16       Impact factor: 7.400

  4 in total

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