Literature DB >> 36048345

ABOT: an open-source online benchmarking tool for machine learning-based artefact detection and removal methods from neuronal signals.

Marcos Fabietti1, Mufti Mahmud2,3,4, Ahmad Lotfi1, M Shamim Kaiser5.   

Abstract

Brain signals are recorded using different techniques to aid an accurate understanding of brain function and to treat its disorders. Untargeted internal and external sources contaminate the acquired signals during the recording process. Often termed as artefacts, these contaminations cause serious hindrances in decoding the recorded signals; hence, they must be removed to facilitate unbiased decision-making for a given investigation. Due to the complex and elusive manifestation of artefacts in neuronal signals, computational techniques serve as powerful tools for their detection and removal. Machine learning (ML) based methods have been successfully applied in this task. Due to ML's popularity, many articles are published every year, making it challenging to find, compare and select the most appropriate method for a given experiment. To this end, this paper presents ABOT (Artefact removal Benchmarking Online Tool) as an online benchmarking tool which allows users to compare existing ML-driven artefact detection and removal methods from the literature. The characteristics and related information about the existing methods have been compiled as a knowledgebase (KB) and presented through a user-friendly interface with interactive plots and tables for users to search it using several criteria. Key characteristics extracted from over 120 articles from the literature have been used in the KB to help compare the specific ML models. To comply with the FAIR (Findable, Accessible, Interoperable and Reusable) principle, the source code and documentation of the toolbox have been made available via an open-access repository.
© 2022. The Author(s).

Entities:  

Keywords:  Computational neuroscience; Electrocorticogram; Electroencephalogram; Local field potentials; Magnetoencephalogram; Neuronal spikes

Year:  2022        PMID: 36048345      PMCID: PMC9437165          DOI: 10.1186/s40708-022-00167-3

Source DB:  PubMed          Journal:  Brain Inform        ISSN: 2198-4026


  47 in total

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Authors:  Mehrdad Fatourechi; Ali Bashashati; Rabab K Ward; Gary E Birch
Journal:  Clin Neurophysiol       Date:  2006-12-13       Impact factor: 3.708

2.  Removal of EMG and ECG artifacts from EEG based on wavelet transform and ICA.

Authors:  Weidong Zhou; Jean Gotman
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3.  Boosting specificity of MEG artifact removal by weighted support vector machine.

Authors:  Fang Duan; Montri Phothisonothai; Mitsuru Kikuchi; Yuko Yoshimura; Yoshio Minabe; Kastumi Watanabe; Kazuyuki Aihara
Journal:  Conf Proc IEEE Eng Med Biol Soc       Date:  2013

4.  Automatic detection of EEG artefacts arising from head movements using EEG and gyroscope signals.

Authors:  Simon O'Regan; Stephen Faul; William Marnane
Journal:  Med Eng Phys       Date:  2012-09-25       Impact factor: 2.242

5.  Deep learning-based electroencephalography analysis: a systematic review.

Authors:  Yannick Roy; Hubert Banville; Isabela Albuquerque; Alexandre Gramfort; Tiago H Falk; Jocelyn Faubert
Journal:  J Neural Eng       Date:  2019-08-14       Impact factor: 5.379

6.  On the photovoltaic effect in local field potential recordings.

Authors:  Sanja Mikulovic; Stefano Pupe; Helton Maia Peixoto; George C Do Nascimento; Klas Kullander; Adriano B L Tort; Richardson N Leão
Journal:  Neurophotonics       Date:  2016-01-19       Impact factor: 3.593

7.  Automatic 1D Convolutional Neural Network-based Detection of Artifacts in MEG acquired without Electrooculography or Electrocardiography.

Authors:  Prabhat Garg; Elizabeth Davenport; Gowtham Murugesan; Ben Wagner; Christopher Whitlow; Joseph Maldjian; Albert Montillo
Journal:  Int Workshop Pattern Recognit Neuroimaging       Date:  2017-07-20

Review 8.  Removal of Artifacts from EEG Signals: A Review.

Authors:  Xiao Jiang; Gui-Bin Bian; Zean Tian
Journal:  Sensors (Basel)       Date:  2019-02-26       Impact factor: 3.576

9.  Dampened Slow Oscillation Connectivity Anticipates Amyloid Deposition in the PS2APP Mouse Model of Alzheimer's Disease.

Authors:  Alessandro Leparulo; Mufti Mahmud; Elena Scremin; Tullio Pozzan; Stefano Vassanelli; Cristina Fasolato
Journal:  Cells       Date:  2019-12-24       Impact factor: 6.600

Review 10.  Magnetoencephalography: fundamentals and established and emerging clinical applications in radiology.

Authors:  Sven Braeutigam
Journal:  ISRN Radiol       Date:  2013-08-12
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