Literature DB >> 31656826

Automatic 1D Convolutional Neural Network-based Detection of Artifacts in MEG acquired without Electrooculography or Electrocardiography.

Prabhat Garg1, Elizabeth Davenport1, Gowtham Murugesan1, Ben Wagner1, Christopher Whitlow2, Joseph Maldjian1, Albert Montillo1.   

Abstract

Magnetoencephalography (MEG) is a functional neuroimaging tool that records the magnetic fields induced by electrical neuronal activity; however, signal from non-neuronal sources can corrupt the data. Eye-Blinks (EB) and Cardiac Activity (CA) are two of the most common types of non-neuronal artifacts. They can be measured by affixing eye proximal electrodes, as in electrooculography (EOG) and chest electrodes, as in electrocardiography (EKG), however this complicates imaging setup, decreases patient comfort, and often induces further artifacts from facial twitching and postural muscle movement. We propose an EOG- and EKG-free approach to identify eye-blink, cardiac, or neuronal signals for automated artifact suppression. Our contributions are two-fold. First, we combine a data driven, multivariate decomposition approach based on Independent Component Analysis (ICA) and a highly accurate classifier constructed as a deep 1-D Convolutional Neural Network. Second, we visualize the features learned to reveal what features the model uses and to bolster user confidence in our model's training and potential for generalization. We train and test three variants of our method on resting state MEG data from 49 subjects. Our cardiac model achieves a 96% sensitivity and 99% specificity on the set-aside test-set. Our eye-blink model achieves a sensitivity of 85% and specificity of 97%. This work facilitates automated MEG processing for both, clinical and research use, and can obviate the need for EOG or EKG electrodes.

Entities:  

Keywords:  CNN; EKG; EOG; MEG; artifact; deep learning

Year:  2017        PMID: 31656826      PMCID: PMC6814172          DOI: 10.1109/PRNI.2017.7981506

Source DB:  PubMed          Journal:  Int Workshop Pattern Recognit Neuroimaging        ISSN: 2330-9989


  10 in total

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2.  Boosting specificity of MEG artifact removal by weighted support vector machine.

Authors:  Fang Duan; Montri Phothisonothai; Mitsuru Kikuchi; Yuko Yoshimura; Yoshio Minabe; Kastumi Watanabe; Kazuyuki Aihara
Journal:  Conf Proc IEEE Eng Med Biol Soc       Date:  2013

3.  Signal-to-noise ratio of the MEG signal after preprocessing.

Authors:  Alicia Gonzalez-Moreno; Sara Aurtenetxe; Maria-Eugenia Lopez-Garcia; Francisco del Pozo; Fernando Maestu; Angel Nevado
Journal:  J Neurosci Methods       Date:  2013-11-04       Impact factor: 2.390

4.  Ocular and cardiac artifact rejection for real-time analysis in MEG.

Authors:  Lukas Breuer; Jürgen Dammers; Timothy P L Roberts; N Jon Shah
Journal:  J Neurosci Methods       Date:  2014-06-19       Impact factor: 2.390

5.  Abnormal white matter integrity related to head impact exposure in a season of high school varsity football.

Authors:  Elizabeth M Davenport; Christopher T Whitlow; Jillian E Urban; Mark A Espeland; Youngkyoo Jung; Daryl A Rosenbaum; Gerard A Gioia; Alexander K Powers; Joel D Stitzel; Joseph A Maldjian
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6.  An information-maximization approach to blind separation and blind deconvolution.

Authors:  A J Bell; T J Sejnowski
Journal:  Neural Comput       Date:  1995-11       Impact factor: 2.026

7.  ICA-based artifact correction improves spatial localization of adaptive spatial filters in MEG.

Authors:  Zainab Fatima; Maher A Quraan; Natasa Kovacevic; Anthony Randal McIntosh
Journal:  Neuroimage       Date:  2013-04-18       Impact factor: 6.556

8.  Brainstorm: a user-friendly application for MEG/EEG analysis.

Authors:  François Tadel; Sylvain Baillet; John C Mosher; Dimitrios Pantazis; Richard M Leahy
Journal:  Comput Intell Neurosci       Date:  2011-04-13

9.  High-frequency brain activity and muscle artifacts in MEG/EEG: a review and recommendations.

Authors:  Suresh D Muthukumaraswamy
Journal:  Front Hum Neurosci       Date:  2013-04-15       Impact factor: 3.169

10.  Good practice for conducting and reporting MEG research.

Authors:  Joachim Gross; Sylvain Baillet; Gareth R Barnes; Richard N Henson; Arjan Hillebrand; Ole Jensen; Karim Jerbi; Vladimir Litvak; Burkhard Maess; Robert Oostenveld; Lauri Parkkonen; Jason R Taylor; Virginie van Wassenhove; Michael Wibral; Jan-Mathijs Schoffelen
Journal:  Neuroimage       Date:  2012-10-06       Impact factor: 6.556

  10 in total
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Journal:  IEEE Trans Med Imaging       Date:  2019-07-17       Impact factor: 10.048

2.  ABOT: an open-source online benchmarking tool for machine learning-based artefact detection and removal methods from neuronal signals.

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Authors:  Hongliang Zhou; Zongpeng Dai; Lingling Hua; Haiteng Jiang; Shui Tian; Yinglin Han; Pinhua Lin; Haofei Wang; Qing Lu; Zhjjian Yao
Journal:  Front Psychiatry       Date:  2020-01-22       Impact factor: 4.157

4.  MEGnet: Automatic ICA-based artifact removal for MEG using spatiotemporal convolutional neural networks.

Authors:  Alex H Treacher; Prabhat Garg; Elizabeth Davenport; Ryan Godwin; Amy Proskovec; Leonardo Guimaraes Bezerra; Gowtham Murugesan; Ben Wagner; Christopher T Whitlow; Joel D Stitzel; Joseph A Maldjian; Albert A Montillo
Journal:  Neuroimage       Date:  2021-07-16       Impact factor: 7.400

  4 in total

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