| Literature DB >> 31642196 |
Raziel Tapia-Llanos1,2, José F Muñoz-Valle1, Ilce V Román-Fernández1, Miguel Marín-Rosales3, Diana C Salazar-Camarena1, Alvaro Cruz1, Gerardo Orozco-Barocio3, Jorge A Guareña-Casillas4, Edith Oregon-Romero1, Claudia A Palafox-Sánchez1.
Abstract
BACKGROUND: CD40 is a transmembrane protein mainly expressed on the antigen-presenting cells surface. CD40 plays a crucial role in immunoglobulin class switching and antibodies production. Genetic polymorphisms in the CD40 gene have been associated with increased risk of systemic lupus erythematosus (SLE) in several populations. This study aimed to evaluate the association of CD40 polymorphisms (-1 C > T, rs1883832 and 6,048 G > T, rs4810485) with SLE susceptibility, as well as with mRNA expression and soluble CD40 (sCD40) levels.Entities:
Keywords: CD40 polymorphisms; rs1883832; rs4810485 −1 C > T and 6,048 G > T polymorphisms; soluble CD40; systemic lupus erythematosus
Mesh:
Substances:
Year: 2019 PMID: 31642196 PMCID: PMC6900383 DOI: 10.1002/mgg3.1014
Source DB: PubMed Journal: Mol Genet Genomic Med ISSN: 2324-9269 Impact factor: 2.183
Genotype, allele, and haplotype frequencies of CD40 SNPs (−1 C > T and 6,048 G > T) in CS and SLE patients
| SNP | CS | SLE |
| OR (CI 95%) |
|
|---|---|---|---|---|---|
| −1 C > T (rs1883832) | |||||
| CC | 193 (65.5) | 169 (57.7) | .027 | 1 | — |
| CT | 95 (32.3) | 107 (36.5) | 1.286 [0.911–1.816] | .152 | |
| TT | 6 (2) | 17 (5.8) | 3.236 [1.247–8.397] | .016 | |
| Allele | |||||
| C | 481 (81.8) | 445 (75.9) | .014 | 1 | — |
| T | 107 (18.2) | 141 (24.1) | 1.424 [1.074–1.889] | .014 | |
| Dominant | |||||
| CC | 193 (65.6) | 169 (57.7) | .047 | 1 | — |
| CT + TT | 101 (34.4) | 124 (42.3) | 1.402 [1.004–1.958] | .047 | |
| 6,048 G > T (rs4810485) | |||||
| GG | 192 (65.3) | 162 (55.3) | .03 | 1 | — |
| GT | 94 (32) | 116 (39.6) | 1.463 [1.038–2.061] | .029 | |
| TT | 8 (2.7) | 15 (5.1) | 2.222 [0.918–5.376] | .085 | |
| Allele | |||||
| G | 478 (81.3) | 440 (75.1) | .010 | 1 | — |
| T | 110 (18.7) | 146 (24.9) | 1.442 [1.090–1.907] | .010 | |
| Dominant | |||||
| GG | 192 (65.3) | 162 (553) | .013 | 1 | — |
| GT + TT | 102 (34.7) | 131 (44.7) | 1.522 [1.091–2.123] | .013 | |
| Haplotype | 2n = 588 (%) | 2n = 586 (%) | |||
| C G | 475 (80.7) | 435 (74.2) |
| 1 | — |
| T T | 104 (17.7) | 136 (23.2) | 1.428 [1.072–1.902] | .014 | |
Abbreviations: CI, Confidence interval; CS, control subjects; OR, odds ratio; SLE, systemic lupus erythematosus; SNP, single nucleotide polymorphism.
Haplotype analysis included the −1 C > T (rs1883832) and 6048G > T (rs4810485) polymorphisms of CD40 gene and all those with a frequency <0.03 were ignored in the analysis.
Figure 1CD40 gene expression and sCD40 levels according to −1 C > T (rs1883832) and 6,048 G > T (rs4810485) polymorphisms. (a) CD40 gene expression in CS and SLE patients, (b) sCD40 levels in CS and SLE patients, (c) and (d) sCD40 levels according to −1 C > T (rs1883832) and 6,048 G > T (rs4810485) genotypes; (e) CD40 gene expression according to dominant model of −1 C > T (rs1883832) polymorphism in SLE patients, and (f) sCD40 levels according to dominant model of −1 C > T (rs1883832) polymorphism in SLE patients. The qualitative gene expression analysis was obtained through to Pfaffl's method. Mann‐Whitney U test, Kruskal‐Wallis test, and Dunn's post hoc test were used. Fc was obtained through the 2‐ΔΔCq method. Data are shown in median and IQR. CS: Control subjects, Fc: Fold change, IQR: Interquartile range, SLE: Systemic Lupus Erythematosus
Figure 2CD40 gene expression and sCD40 levels according to SLE activity. (a) CD40 gene expression according to disease activity (b) sCD40 levels according to disease activity, (c) sCD40 levels and SLICC damage index correlation, (d) sCD40 levels and eGFR correlation, (e) association between sCD40 levels and KDIGO stage, and (f) sCD40 levels and CKD (SLE patients with an eGFR < 50ml/min/1.73m2). The qualitative gene expression analysis was obtained through to Pfaffl's method. Mann‐Whitney U test, Kruskal‐Wallis test, Dunn's post hoc test, and Spearman rank correlation coefficient were used, Fc was obtained through the 2‐ΔΔCq method. Data are shown in median and IQR. CS: Control Subjects, CKD: Chronic Kidney Disease, eGFR: estimated Glomerular Filtration Rate, KDIGO: Kidney Disease Improving Global Outcomes, Fc: Fold change, IQR: Interquartile range, SLE: Systemic Lupus Erythematosus