Literature DB >> 31607513

Genome-wide Association Studies in Ancestrally Diverse Populations: Opportunities, Methods, Pitfalls, and Recommendations.

Roseann E Peterson1, Karoline Kuchenbaecker2, Raymond K Walters3, Chia-Yen Chen4, Alice B Popejoy5, Sathish Periyasamy6, Max Lam3, Conrad Iyegbe7, Rona J Strawbridge8, Leslie Brick9, Caitlin E Carey10, Alicia R Martin3, Jacquelyn L Meyers11, Jinni Su12, Junfang Chen13, Alexis C Edwards14, Allan Kalungi15, Nastassja Koen16, Lerato Majara17, Emanuel Schwarz13, Jordan W Smoller18, Eli A Stahl19, Patrick F Sullivan20, Evangelos Vassos21, Bryan Mowry6, Miguel L Prieto22, Alfredo Cuellar-Barboza23, Tim B Bigdeli11, Howard J Edenberg24, Hailiang Huang3, Laramie E Duncan25.   

Abstract

Genome-wide association studies (GWASs) have focused primarily on populations of European descent, but it is essential that diverse populations become better represented. Increasing diversity among study participants will advance our understanding of genetic architecture in all populations and ensure that genetic research is broadly applicable. To facilitate and promote research in multi-ancestry and admixed cohorts, we outline key methodological considerations and highlight opportunities, challenges, solutions, and areas in need of development. Despite the perception that analyzing genetic data from diverse populations is difficult, it is scientifically and ethically imperative, and there is an expanding analytical toolbox to do it well.
Copyright © 2019 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  GWAS; admixed populations; ancestry; complex disease; cross-ancestry; diversity; population genetics; psychiatry; trans-ancestry; trans-ethnic

Mesh:

Year:  2019        PMID: 31607513      PMCID: PMC6939869          DOI: 10.1016/j.cell.2019.08.051

Source DB:  PubMed          Journal:  Cell        ISSN: 0092-8674            Impact factor:   41.582


  75 in total

1.  Interpretation of interactions: guide for the perplexed.

Authors:  Kenneth S Kendler; Charles O Gardner
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2.  Evaluating coverage of genome-wide association studies.

Authors:  Jeffrey C Barrett; Lon R Cardon
Journal:  Nat Genet       Date:  2006-05-21       Impact factor: 38.330

Review 3.  From genome-wide associations to candidate causal variants by statistical fine-mapping.

Authors:  Daniel J Schaid; Wenan Chen; Nicholas B Larson
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Authors: 
Journal:  Nat Genet       Date:  2013-06       Impact factor: 38.330

6.  Comparative genetic architectures of schizophrenia in East Asian and European populations.

Authors:  Max Lam; Chia-Yen Chen; Zhiqiang Li; Alicia R Martin; Julien Bryois; Xixian Ma; Helena Gaspar; Masashi Ikeda; Beben Benyamin; Brielin C Brown; Ruize Liu; Wei Zhou; Lili Guan; Yoichiro Kamatani; Sung-Wan Kim; Michiaki Kubo; Agung A A A Kusumawardhani; Chih-Min Liu; Hong Ma; Sathish Periyasamy; Atsushi Takahashi; Zhida Xu; Hao Yu; Feng Zhu; Wei J Chen; Stephen Faraone; Stephen J Glatt; Lin He; Steven E Hyman; Hai-Gwo Hwu; Steven A McCarroll; Benjamin M Neale; Pamela Sklar; Dieter B Wildenauer; Xin Yu; Dai Zhang; Bryan J Mowry; Jimmy Lee; Peter Holmans; Shuhua Xu; Patrick F Sullivan; Stephan Ripke; Michael C O'Donovan; Mark J Daly; Shengying Qin; Pak Sham; Nakao Iwata; Kyung S Hong; Sibylle G Schwab; Weihua Yue; Ming Tsuang; Jianjun Liu; Xiancang Ma; René S Kahn; Yongyong Shi; Hailiang Huang
Journal:  Nat Genet       Date:  2019-11-18       Impact factor: 38.330

Review 7.  Prioritizing diversity in human genomics research.

Authors:  Lucia A Hindorff; Vence L Bonham; Lawrence C Brody; Margaret E C Ginoza; Carolyn M Hutter; Teri A Manolio; Eric D Green
Journal:  Nat Rev Genet       Date:  2017-11-20       Impact factor: 53.242

8.  Fine-mapping inflammatory bowel disease loci to single-variant resolution.

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Journal:  Nature       Date:  2017-06-28       Impact factor: 49.962

9.  Cohort-wide deep whole genome sequencing and the allelic architecture of complex traits.

Authors:  Arthur Gilly; Daniel Suveges; Karoline Kuchenbaecker; Martin Pollard; Lorraine Southam; Konstantinos Hatzikotoulas; Aliki-Eleni Farmaki; Thea Bjornland; Ryan Waples; Emil V R Appel; Elisabetta Casalone; Giorgio Melloni; Britt Kilian; Nigel W Rayner; Ioanna Ntalla; Kousik Kundu; Klaudia Walter; John Danesh; Adam Butterworth; Inês Barroso; Emmanouil Tsafantakis; George Dedoussis; Ida Moltke; Eleftheria Zeggini
Journal:  Nat Commun       Date:  2018-11-07       Impact factor: 14.919

Review 10.  Population structure in genetic studies: Confounding factors and mixed models.

Authors:  Jae Hoon Sul; Lana S Martin; Eleazar Eskin
Journal:  PLoS Genet       Date:  2018-12-27       Impact factor: 5.917

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  112 in total

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2.  Don't ignore genetic data from minority populations.

Authors:  Chief Ben-Eghan; Rosie Sun; Jose Sergio Hleap; Alex Diaz-Papkovich; Hans Markus Munter; Audrey V Grant; Charles Dupras; Simon Gravel
Journal:  Nature       Date:  2020-09       Impact factor: 49.962

3.  Genetic Architecture and Molecular Neuropathology of Human Cocaine Addiction.

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Review 5.  Four Actionable Bottlenecks and Potential Solutions to Translating Psychiatric Genetics Research: An Expert Review.

Authors:  Jessica L Bourdon; Rachel A Davies; Elizabeth C Long
Journal:  Public Health Genomics       Date:  2020-11-04       Impact factor: 2.000

6.  Genome-Wide Association Studies of Schizophrenia and Bipolar Disorder in a Diverse Cohort of US Veterans.

Authors:  Tim B Bigdeli; Ayman H Fanous; Yuli Li; Nallakkandi Rajeevan; Frederick Sayward; Giulio Genovese; Rishab Gupta; Krishnan Radhakrishnan; Anil K Malhotra; Ning Sun; Qiongshi Lu; Yiming Hu; Boyang Li; Quan Chen; Shrikant Mane; Perry Miller; Kei-Hoi Cheung; Raquel E Gur; Tiffany A Greenwood; David L Braff; Eric D Achtyes; Peter F Buckley; Michael A Escamilla; Douglas Lehrer; Dolores P Malaspina; Steven A McCarroll; Mark H Rapaport; Marquis P Vawter; Michele T Pato; Carlos N Pato; Hongyu Zhao; Thomas R Kosten; Mary Brophy; Saiju Pyarajan; Yunling Shi; Timothy J O'Leary; Theresa Gleason; Ronald Przygodzki; Sumitra Muralidhar; J Michael Gaziano; Grant D Huang; John Concato; Larry J Siever; Mihaela Aslan; Philip D Harvey
Journal:  Schizophr Bull       Date:  2021-03-16       Impact factor: 9.306

7.  Genetic Moderation of the Association Between Early Family Instability and Trajectories of Aggressive Behaviors from Middle Childhood to Adolescence.

Authors:  Sean R Womack; Sierra Clifford; Melvin N Wilson; Daniel S Shaw; Kathryn Lemery-Chalfant
Journal:  Behav Genet       Date:  2021-06-03       Impact factor: 2.805

8.  A unified framework for cross-population trait prediction by leveraging the genetic correlation of polygenic traits.

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9.  Polygenic risk for major depression is associated with lifetime suicide attempt in US soldiers independent of personal and parental history of major depression.

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Journal:  Am J Med Genet B Neuropsychiatr Genet       Date:  2021-07-21       Impact factor: 3.568

10.  Cooperative Studies Program (CSP) #572: A Study of Serious Mental Illness in Veterans as a Pathway to personalized medicine in Schizophrenia and Bipolar Illness.

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