Literature DB >> 31740837

Comparative genetic architectures of schizophrenia in East Asian and European populations.

Max Lam1,2,3,4,5,6, Chia-Yen Chen4,5,7,8,9, Zhiqiang Li10,11, Alicia R Martin4,5,7, Julien Bryois12, Xixian Ma13, Helena Gaspar14, Masashi Ikeda15, Beben Benyamin16,17,18, Brielin C Brown19,20, Ruize Liu4,5, Wei Zhou11,21, Lili Guan22,23,24, Yoichiro Kamatani25,26, Sung-Wan Kim27, Michiaki Kubo28, Agung A A A Kusumawardhani29, Chih-Min Liu30,31, Hong Ma22,23,24, Sathish Periyasamy32,33, Atsushi Takahashi26,34, Zhida Xu35, Hao Yu22,23,24, Feng Zhu36,37,38, Wei J Chen30,31,39, Stephen Faraone40, Stephen J Glatt41, Lin He11,42,43, Steven E Hyman5,44, Hai-Gwo Hwu30,31,39, Steven A McCarroll5,45, Benjamin M Neale4,5,7, Pamela Sklar46, Dieter B Wildenauer47, Xin Yu22,23,24, Dai Zhang22,23,24, Bryan J Mowry32,33, Jimmy Lee48, Peter Holmans49, Shuhua Xu13,50,51,52, Patrick F Sullivan53, Stephan Ripke4,5,54, Michael C O'Donovan49, Mark J Daly4,5,7,55, Shengying Qin11,56, Pak Sham57,58, Nakao Iwata15, Kyung S Hong59, Sibylle G Schwab60,61, Weihua Yue62,63,64,65, Ming Tsuang66, Jianjun Liu67,68, Xiancang Ma69,70,71, René S Kahn72,73,74, Yongyong Shi75,76,77,78, Hailiang Huang79,80,81.   

Abstract

Schizophrenia is a debilitating psychiatric disorder with approximately 1% lifetime risk globally. Large-scale schizophrenia genetic studies have reported primarily on European ancestry samples, potentially missing important biological insights. Here, we report the largest study to date of East Asian participants (22,778 schizophrenia cases and 35,362 controls), identifying 21 genome-wide-significant associations in 19 genetic loci. Common genetic variants that confer risk for schizophrenia have highly similar effects between East Asian and European ancestries (genetic correlation = 0.98 ± 0.03), indicating that the genetic basis of schizophrenia and its biology are broadly shared across populations. A fixed-effect meta-analysis including individuals from East Asian and European ancestries identified 208 significant associations in 176 genetic loci (53 novel). Trans-ancestry fine-mapping reduced the sets of candidate causal variants in 44 loci. Polygenic risk scores had reduced performance when transferred across ancestries, highlighting the importance of including sufficient samples of major ancestral groups to ensure their generalizability across populations.

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Mesh:

Year:  2019        PMID: 31740837      PMCID: PMC6885121          DOI: 10.1038/s41588-019-0512-x

Source DB:  PubMed          Journal:  Nat Genet        ISSN: 1061-4036            Impact factor:   38.330


  76 in total

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Authors:  H Yu; H Yan; J Li; Z Li; X Zhang; Y Ma; L Mei; C Liu; L Cai; Q Wang; F Zhang; N Iwata; M Ikeda; L Wang; T Lu; M Li; H Xu; X Wu; B Liu; J Yang; K Li; L Lv; X Ma; C Wang; L Li; F Yang; T Jiang; Y Shi; T Li; D Zhang; W Yue
Journal:  Mol Psychiatry       Date:  2016-12-06       Impact factor: 15.992

3.  A common Greenlandic TBC1D4 variant confers muscle insulin resistance and type 2 diabetes.

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Journal:  Nature       Date:  2014-06-18       Impact factor: 49.962

4.  Genome-wide association analysis identifies 30 new susceptibility loci for schizophrenia.

Authors:  Zhiqiang Li; Jianhua Chen; Hao Yu; Lin He; Yifeng Xu; Dai Zhang; Qizhong Yi; Changgui Li; Xingwang Li; Jiawei Shen; Zhijian Song; Weidong Ji; Meng Wang; Juan Zhou; Boyu Chen; Yahui Liu; Jiqiang Wang; Peng Wang; Ping Yang; Qingzhong Wang; Guoyin Feng; Benxiu Liu; Wensheng Sun; Baojie Li; Guang He; Weidong Li; Chunling Wan; Qi Xu; Wenjin Li; Zujia Wen; Ke Liu; Fang Huang; Jue Ji; Stephan Ripke; Weihua Yue; Patrick F Sullivan; Michael C O'Donovan; Yongyong Shi
Journal:  Nat Genet       Date:  2017-10-09       Impact factor: 38.330

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Journal:  Am J Hum Genet       Date:  2017-07-06       Impact factor: 11.025

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Journal:  Nat Commun       Date:  2015-12-22       Impact factor: 14.919

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Authors:  T-K Clarke; M J Adams; G Davies; D M Howard; L S Hall; S Padmanabhan; A D Murray; B H Smith; A Campbell; C Hayward; D J Porteous; I J Deary; A M McIntosh
Journal:  Mol Psychiatry       Date:  2017-07-25       Impact factor: 15.992

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Journal:  Nat Genet       Date:  2018-02-26       Impact factor: 38.330

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  131 in total

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2.  Negative selection on complex traits limits phenotype prediction accuracy between populations.

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Review 3.  Importance of Genetic Studies of Cardiometabolic Disease in Diverse Populations.

Authors:  Lindsay Fernández-Rhodes; Kristin L Young; Adam G Lilly; Laura M Raffield; Heather M Highland; Genevieve L Wojcik; Cary Agler; Shelly-Ann M Love; Samson Okello; Lauren E Petty; Mariaelisa Graff; Jennifer E Below; Kimon Divaris; Kari E North
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4.  Genome-wide Association Study of Creativity Reveals Genetic Overlap With Psychiatric Disorders, Risk Tolerance, and Risky Behaviors.

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5.  Genome-wide Association Study of Maximum Habitual Alcohol Intake in >140,000 U.S. European and African American Veterans Yields Novel Risk Loci.

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6.  A Human-Specific Schizophrenia Risk Tandem Repeat Affects Alternative Splicing of a Human-Unique Isoform AS3MTd2d3 and Mushroom Dendritic Spine Density.

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Review 10.  Polygenic risk score as clinical utility in psychiatry: a clinical viewpoint.

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