Literature DB >> 31591189

GDGT cyclization proteins identify the dominant archaeal sources of tetraether lipids in the ocean.

Zhirui Zeng1, Xiao-Lei Liu2, Kristen R Farley3, Jeremy H Wei1, William W Metcalf3,4, Roger E Summons5, Paula V Welander6.   

Abstract

Glycerol dibiphytanyl glycerol tetraethers (GDGTs) are distinctive archaeal membrane-spanning lipids with up to eight cyclopentane rings and/or one cyclohexane ring. The number of rings added to the GDGT core structure can vary as a function of environmental conditions, such as changes in growth temperature. This physiological response enables cyclic GDGTs preserved in sediments to be employed as proxies for reconstructing past global and regional temperatures and to provide fundamental insights into ancient climate variability. Yet, confidence in GDGT-based paleotemperature proxies is hindered by uncertainty concerning the archaeal communities contributing to GDGT pools in modern environments and ambiguity in the environmental and physiological factors that affect GDGT cyclization in extant archaea. To properly constrain these uncertainties, a comprehensive understanding of GDGT biosynthesis is required. Here, we identify 2 GDGT ring synthases, GrsA and GrsB, essential for GDGT ring formation in Sulfolobus acidocaldarius Both proteins are radical S-adenosylmethionine proteins, indicating that GDGT cyclization occurs through a free radical mechanism. In addition, we demonstrate that GrsA introduces rings specifically at the C-7 position of the core GDGT lipid, while GrsB cyclizes at the C-3 position, suggesting that cyclization patterns are differentially controlled by 2 separate enzymes and potentially influenced by distinct environmental factors. Finally, phylogenetic analyses of the Grs proteins reveal that marine Thaumarchaeota, and not Euryarchaeota, are the dominant source of cyclized GDGTs in open ocean settings, addressing a major source of uncertainty in GDGT-based paleotemperature proxy applications.

Entities:  

Keywords:  GDGT; Sulfolobus; paleotemperature proxies; radical SAM

Year:  2019        PMID: 31591189      PMCID: PMC6842593          DOI: 10.1073/pnas.1909306116

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  30 in total

1.  Community genomics among stratified microbial assemblages in the ocean's interior.

Authors:  Edward F DeLong; Christina M Preston; Tracy Mincer; Virginia Rich; Steven J Hallam; Niels-Ulrik Frigaard; Asuncion Martinez; Matthew B Sullivan; Robert Edwards; Beltran Rodriguez Brito; Sallie W Chisholm; David M Karl
Journal:  Science       Date:  2006-01-27       Impact factor: 47.728

Review 2.  Adaptations to energy stress dictate the ecology and evolution of the Archaea.

Authors:  David L Valentine
Journal:  Nat Rev Microbiol       Date:  2007-03-05       Impact factor: 60.633

3.  Influence of ammonia oxidation rate on thaumarchaeal lipid composition and the TEX86 temperature proxy.

Authors:  Sarah J Hurley; Felix J Elling; Martin Könneke; Carolyn Buchwald; Scott D Wankel; Alyson E Santoro; Julius Sebastian Lipp; Kai-Uwe Hinrichs; Ann Pearson
Journal:  Proc Natl Acad Sci U S A       Date:  2016-06-28       Impact factor: 11.205

4.  Are Marine Group II Euryarchaeota significant contributors to tetraether lipids in the ocean?

Authors:  Stefan Schouten; Laura Villanueva; Ellen C Hopmans; Marcel T J van der Meer; Jaap S Sinninghe Damsté
Journal:  Proc Natl Acad Sci U S A       Date:  2014-09-19       Impact factor: 11.205

5.  Reply to Schouten et al.: Marine Group II planktonic Euryarchaeota are significant contributors to tetraether lipids in the ocean.

Authors:  Sara A Lincoln; Brenner Wai; John M Eppley; Matthew J Church; Roger E Summons; Edward F DeLong
Journal:  Proc Natl Acad Sci U S A       Date:  2014-09-19       Impact factor: 11.205

Review 6.  A re-evaluation of the archaeal membrane lipid biosynthetic pathway.

Authors:  Laura Villanueva; Jaap S Sinninghe Damsté; Stefan Schouten
Journal:  Nat Rev Microbiol       Date:  2014-05-07       Impact factor: 60.633

7.  Effect of growth temperature on ether lipid biochemistry in Archaeoglobus fulgidus.

Authors:  Denton Lai; James R Springstead; Harold G Monbouquette
Journal:  Extremophiles       Date:  2007-12-22       Impact factor: 2.395

8.  Geranylgeranyl reductase involved in the biosynthesis of archaeal membrane lipids in the hyperthermophilic archaeon Archaeoglobus fulgidus.

Authors:  Motomichi Murakami; Kyohei Shibuya; Toru Nakayama; Tokuzo Nishino; Tohru Yoshimura; Hisashi Hemmi
Journal:  FEBS J       Date:  2007-02       Impact factor: 5.542

9.  Crenarchaeol: the characteristic core glycerol dibiphytanyl glycerol tetraether membrane lipid of cosmopolitan pelagic crenarchaeota.

Authors:  Jaap S Sinninghe Damsté; Stefan Schouten; Ellen C Hopmans; Adri C T van Duin; Jan A J Geenevasen
Journal:  J Lipid Res       Date:  2002-10       Impact factor: 5.922

10.  Identification and characterization of Rhodopseudomonas palustris TIE-1 hopanoid biosynthesis mutants.

Authors:  P V Welander; D M Doughty; C-H Wu; S Mehay; R E Summons; D K Newman
Journal:  Geobiology       Date:  2012-01-04       Impact factor: 4.407

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  9 in total

1.  Resolving a piece of the archaeal lipid puzzle.

Authors:  Ann Pearson
Journal:  Proc Natl Acad Sci U S A       Date:  2019-10-18       Impact factor: 11.205

Review 2.  Lipid biomarkers: molecular tools for illuminating the history of microbial life.

Authors:  Roger E Summons; Paula V Welander; David A Gold
Journal:  Nat Rev Microbiol       Date:  2021-10-11       Impact factor: 60.633

Review 3.  Highlighting the Unique Roles of Radical S-Adenosylmethionine Enzymes in Methanogenic Archaea.

Authors:  Kaleb Boswinkle; Justin McKinney; Kylie D Allen
Journal:  J Bacteriol       Date:  2022-07-26       Impact factor: 3.476

Review 4.  The catalytic and structural basis of archaeal glycerophospholipid biosynthesis.

Authors:  Niels A W de Kok; Arnold J M Driessen
Journal:  Extremophiles       Date:  2022-08-17       Impact factor: 3.035

5.  Evidence for Enzymatic Backbone Methylation of the Main Membrane Lipids in the Archaeon Methanomassiliicoccus luminyensis.

Authors:  Sarah Coffinet; Lukas Mühlena; Julius S Lipp; Micha Weil; Cajetan Neubauer; Tim Urich; Kai-Uwe Hinrichs
Journal:  Appl Environ Microbiol       Date:  2021-12-22       Impact factor: 5.005

6.  Editorial: Ecology, Metabolism and Evolution of Archaea-Perspectives From Proceedings of the International Workshop on Geo-Omics of Archaea.

Authors:  Brian P Hedlund; Chuanlun Zhang; Fengping Wang; Christian Rinke; William F Martin
Journal:  Front Microbiol       Date:  2022-01-21       Impact factor: 5.640

7.  Identification of a protein responsible for the synthesis of archaeal membrane-spanning GDGT lipids.

Authors:  Zhirui Zeng; Huahui Chen; Huan Yang; Yufei Chen; Wei Yang; Xi Feng; Hongye Pei; Paula V Welander
Journal:  Nat Commun       Date:  2022-03-22       Impact factor: 17.694

8.  Heterotrophic Thaumarchaea with Small Genomes Are Widespread in the Dark Ocean.

Authors:  Frank O Aylward; Alyson E Santoro
Journal:  mSystems       Date:  2020-06-16       Impact factor: 6.496

Review 9.  The Cell Membrane of Sulfolobus spp.-Homeoviscous Adaption and Biotechnological Applications.

Authors:  Kerstin Rastädter; David J Wurm; Oliver Spadiut; Julian Quehenberger
Journal:  Int J Mol Sci       Date:  2020-05-30       Impact factor: 5.923

  9 in total

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