Literature DB >> 27357675

Influence of ammonia oxidation rate on thaumarchaeal lipid composition and the TEX86 temperature proxy.

Sarah J Hurley1, Felix J Elling2, Martin Könneke3, Carolyn Buchwald4, Scott D Wankel5, Alyson E Santoro6, Julius Sebastian Lipp3, Kai-Uwe Hinrichs3, Ann Pearson1.   

Abstract

Archaeal membrane lipids known as glycerol dibiphytanyl glycerol tetraethers (GDGTs) are the basis of the TEX86 paleotemperature proxy. Because GDGTs preserved in marine sediments are thought to originate mainly from planktonic, ammonia-oxidizing Thaumarchaeota, the basis of the correlation between TEX86 and sea surface temperature (SST) remains unresolved: How does TEX86 predict surface temperatures, when maximum thaumarchaeal activity occurs below the surface mixed layer and TEX86 does not covary with in situ growth temperatures? Here we used isothermal studies of the model thaumarchaeon Nitrosopumilus maritimus SCM1 to investigate how GDGT composition changes in response to ammonia oxidation rate. We used continuous culture methods to avoid potential confounding variables that can be associated with experiments in batch cultures. The results show that the ring index scales inversely (R(2) = 0.82) with ammonia oxidation rate (ϕ), indicating that GDGT cyclization depends on available reducing power. Correspondingly, the TEX86 ratio decreases by an equivalent of 5.4 °C of calculated temperature over a 5.5 fmol·cell(-1)·d(-1) increase in ϕ. This finding reconciles other recent experiments that have identified growth stage and oxygen availability as variables affecting TEX86 Depth profiles from the marine water column show minimum TEX86 values at the depth of maximum nitrification rates, consistent with our chemostat results. Our findings suggest that the TEX86 signal exported from the water column is influenced by the dynamics of ammonia oxidation. Thus, the global TEX86-SST calibration potentially represents a composite of regional correlations based on nutrient dynamics and global correlations based on archaeal community composition and temperature.

Entities:  

Keywords:  GDGT; TEX86; Thaumarchaeota; continuous culture; nitrification

Mesh:

Substances:

Year:  2016        PMID: 27357675      PMCID: PMC4948339          DOI: 10.1073/pnas.1518534113

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  31 in total

Review 1.  The cell membrane plays a crucial role in survival of bacteria and archaea in extreme environments.

Authors:  Wil N Konings; Sonja-Verena Albers; Sonja Koning; Arnold J M Driessen
Journal:  Antonie Van Leeuwenhoek       Date:  2002-08       Impact factor: 2.271

2.  Distinct gene set in two different lineages of ammonia-oxidizing archaea supports the phylum Thaumarchaeota.

Authors:  Anja Spang; Roland Hatzenpichler; Céline Brochier-Armanet; Thomas Rattei; Patrick Tischler; Eva Spieck; Wolfgang Streit; David A Stahl; Michael Wagner; Christa Schleper
Journal:  Trends Microbiol       Date:  2010-07-02       Impact factor: 17.079

3.  Single-cell genomics shedding light on marine Thaumarchaeota diversification.

Authors:  Haiwei Luo; Bradley B Tolar; Brandon K Swan; Chuanlun L Zhang; Ramunas Stepanauskas; Mary Ann Moran; James T Hollibaugh
Journal:  ISME J       Date:  2013-11-07       Impact factor: 10.302

4.  Ammonia oxidation kinetics and temperature sensitivity of a natural marine community dominated by Archaea.

Authors:  Rachel E A Horak; Wei Qin; Andy J Schauer; E Virginia Armbrust; Anitra E Ingalls; James W Moffett; David A Stahl; Allan H Devol
Journal:  ISME J       Date:  2013-05-09       Impact factor: 10.302

5.  Structure and mutation analysis of archaeal geranylgeranyl reductase.

Authors:  Daisuke Sasaki; Masahiro Fujihashi; Yuki Iwata; Motomichi Murakami; Tohru Yoshimura; Hisashi Hemmi; Kunio Miki
Journal:  J Mol Biol       Date:  2011-04-16       Impact factor: 5.469

6.  Activity, abundance and diversity of nitrifying archaea and bacteria in the central California Current.

Authors:  Alyson E Santoro; Karen L Casciotti; Christopher A Francis
Journal:  Environ Microbiol       Date:  2010-03-23       Impact factor: 5.491

7.  NADP+ reduction with reduced ferredoxin and NADP+ reduction with NADH are coupled via an electron-bifurcating enzyme complex in Clostridium kluyveri.

Authors:  Shuning Wang; Haiyan Huang; Johanna Moll; Rudolf K Thauer
Journal:  J Bacteriol       Date:  2010-07-30       Impact factor: 3.490

8.  Enrichment and characterization of ammonia-oxidizing archaea from the open ocean: phylogeny, physiology and stable isotope fractionation.

Authors:  Alyson E Santoro; Karen L Casciotti
Journal:  ISME J       Date:  2011-05-12       Impact factor: 10.302

9.  Differential contributions of archaeal ammonia oxidizer ecotypes to nitrification in coastal surface waters.

Authors:  Jason M Smith; Karen L Casciotti; Francisco P Chavez; Christopher A Francis
Journal:  ISME J       Date:  2014-02-20       Impact factor: 10.302

Review 10.  Archaebacterial bipolar tetraether lipids: Physico-chemical and membrane properties.

Authors:  Parkson Lee-Gau Chong
Journal:  Chem Phys Lipids       Date:  2010-01-12       Impact factor: 3.329

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  13 in total

1.  Resolving a piece of the archaeal lipid puzzle.

Authors:  Ann Pearson
Journal:  Proc Natl Acad Sci U S A       Date:  2019-10-18       Impact factor: 11.205

2.  GDGT cyclization proteins identify the dominant archaeal sources of tetraether lipids in the ocean.

Authors:  Zhirui Zeng; Xiao-Lei Liu; Kristen R Farley; Jeremy H Wei; William W Metcalf; Roger E Summons; Paula V Welander
Journal:  Proc Natl Acad Sci U S A       Date:  2019-10-07       Impact factor: 11.205

Review 3.  Lipid biomarkers: molecular tools for illuminating the history of microbial life.

Authors:  Roger E Summons; Paula V Welander; David A Gold
Journal:  Nat Rev Microbiol       Date:  2021-10-11       Impact factor: 60.633

4.  Evidence for Enzymatic Backbone Methylation of the Main Membrane Lipids in the Archaeon Methanomassiliicoccus luminyensis.

Authors:  Sarah Coffinet; Lukas Mühlena; Julius S Lipp; Micha Weil; Cajetan Neubauer; Tim Urich; Kai-Uwe Hinrichs
Journal:  Appl Environ Microbiol       Date:  2021-12-22       Impact factor: 5.005

5.  Isoprenoid Quinones Resolve the Stratification of Redox Processes in a Biogeochemical Continuum from the Photic Zone to Deep Anoxic Sediments of the Black Sea.

Authors:  Kevin W Becker; Felix J Elling; Jan M Schröder; Julius S Lipp; Tobias Goldhammer; Matthias Zabel; Marcus Elvert; Jörg Overmann; Kai-Uwe Hinrichs
Journal:  Appl Environ Microbiol       Date:  2018-05-01       Impact factor: 4.792

6.  Acetoclastic Methanosaeta are dominant methanogens in organic-rich Antarctic marine sediments.

Authors:  Stephanie A Carr; Florence Schubotz; Robert B Dunbar; Christopher T Mills; Robert Dias; Roger E Summons; Kevin W Mandernack
Journal:  ISME J       Date:  2017-10-17       Impact factor: 11.217

Review 7.  Lipids as paleomarkers to constrain the marine nitrogen cycle.

Authors:  Darci Rush; Jaap S Sinninghe Damsté
Journal:  Environ Microbiol       Date:  2017-02-28       Impact factor: 5.491

8.  Daily changes in phytoplankton lipidomes reveal mechanisms of energy storage in the open ocean.

Authors:  Kevin W Becker; James R Collins; Bryndan P Durham; Ryan D Groussman; Angelicque E White; Helen F Fredricks; Justin E Ossolinski; Daniel J Repeta; Paul Carini; E Virginia Armbrust; Benjamin A S Van Mooy
Journal:  Nat Commun       Date:  2018-12-05       Impact factor: 14.919

9.  Climate- and gateway-driven cooling of Late Eocene to earliest Oligocene sea surface temperatures in the North Sea Basin.

Authors:  Kasia K Śliwińska; Erik Thomsen; Stefan Schouten; Petra L Schoon; Claus Heilmann-Clausen
Journal:  Sci Rep       Date:  2019-03-14       Impact factor: 4.379

10.  GDGT distribution in a stratified lake and implications for the application of TEX86 in paleoenvironmental reconstructions.

Authors:  Zhaohui Zhang; Rienk H Smittenberg; Raymond S Bradley
Journal:  Sci Rep       Date:  2016-10-03       Impact factor: 4.379

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