Literature DB >> 24801941

A re-evaluation of the archaeal membrane lipid biosynthetic pathway.

Laura Villanueva1, Jaap S Sinninghe Damsté1, Stefan Schouten1.   

Abstract

Archaea produce unique membrane lipids in which isoprenoid alkyl chains are bound to glycerol moieties via ether linkages. As cultured representatives of the Archaea have become increasingly available throughout the past decade, archaeal genomic and membrane lipid-composition data have also become available. In this Analysis article, we compare the amino acid sequences of the key enzymes of the archaeal ether-lipid biosynthesis pathway and critically evaluate past studies on the biochemical functions of these enzymes. We propose an alternative archaeal lipid biosynthetic pathway that is based on a 'multiple-key, multiple-lock' mechanism.

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Year:  2014        PMID: 24801941     DOI: 10.1038/nrmicro3260

Source DB:  PubMed          Journal:  Nat Rev Microbiol        ISSN: 1740-1526            Impact factor:   60.633


  42 in total

Review 1.  The phylum Nanoarchaeota: present knowledge and future perspectives of a unique form of life.

Authors:  Harald Huber; Michael J Hohn; Karl O Stetter; Reinhard Rachel
Journal:  Res Microbiol       Date:  2003-04       Impact factor: 3.992

Review 2.  The origin and evolution of Archaea: a state of the art.

Authors:  Simonetta Gribaldo; Celine Brochier-Armanet
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2006-06-29       Impact factor: 6.237

3.  Geranylfarnesyl diphosphate synthase from Methanosarcina mazei: Different role, different evolution.

Authors:  Takuya Ogawa; Tohru Yoshimura; Hisashi Hemmi
Journal:  Biochem Biophys Res Commun       Date:  2010-01-25       Impact factor: 3.575

Review 4.  Major players on the microbial stage: why archaea are important.

Authors:  Ken F Jarrell; Alison D Walters; Chitvan Bochiwal; Juliet M Borgia; Thomas Dickinson; James P J Chong
Journal:  Microbiology       Date:  2011-02-17       Impact factor: 2.777

5.  Phylogenetic structure of the prokaryotic domain: the primary kingdoms.

Authors:  C R Woese; G E Fox
Journal:  Proc Natl Acad Sci U S A       Date:  1977-11       Impact factor: 11.205

6.  Characterization of the precursor of tetraether lipid biosynthesis in the thermoacidophilic archaeon Thermoplasma acidophilum.

Authors:  Naoki Nemoto; Yasuo Shida; Haruo Shimada; Tairo Oshima; Akihiko Yamagishi
Journal:  Extremophiles       Date:  2003-02-27       Impact factor: 2.395

7.  Purification and characterization of farnesyl diphosphate/geranylgeranyl diphosphate synthase. A thermostable bifunctional enzyme from Methanobacterium thermoautotrophicum.

Authors:  A Chen; C D Poulter
Journal:  J Biol Chem       Date:  1993-05-25       Impact factor: 5.157

Review 8.  Archaebacterial bipolar tetraether lipids: Physico-chemical and membrane properties.

Authors:  Parkson Lee-Gau Chong
Journal:  Chem Phys Lipids       Date:  2010-01-12       Impact factor: 3.329

Review 9.  The Thaumarchaeota: an emerging view of their phylogeny and ecophysiology.

Authors:  Michael Pester; Christa Schleper; Michael Wagner
Journal:  Curr Opin Microbiol       Date:  2011-05-04       Impact factor: 7.934

10.  MUSCLE: a multiple sequence alignment method with reduced time and space complexity.

Authors:  Robert C Edgar
Journal:  BMC Bioinformatics       Date:  2004-08-19       Impact factor: 3.169

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  32 in total

1.  Mono- and dialkyl glycerol ether lipids in anaerobic bacteria: biosynthetic insights from the mesophilic sulfate reducer Desulfatibacillum alkenivorans PF2803T.

Authors:  Vincent Grossi; Damien Mollex; Arnauld Vinçon-Laugier; Florence Hakil; Muriel Pacton; Cristiana Cravo-Laureau
Journal:  Appl Environ Microbiol       Date:  2015-02-27       Impact factor: 4.792

2.  Structural studies of geranylgeranylglyceryl phosphate synthase, a prenyltransferase found in thermophilic Euryarchaeota.

Authors:  P N Blank; A A Barnett; T A Ronnebaum; K E Alderfer; B N Gillott; D W Christianson; J A Himmelberger
Journal:  Acta Crystallogr D Struct Biol       Date:  2020-05-29       Impact factor: 7.652

Review 3.  Viruses of archaea: Structural, functional, environmental and evolutionary genomics.

Authors:  Mart Krupovic; Virginija Cvirkaite-Krupovic; Jaime Iranzo; David Prangishvili; Eugene V Koonin
Journal:  Virus Res       Date:  2017-11-22       Impact factor: 3.303

4.  Structural characterization of geranylgeranyl pyrophosphate synthase GACE1337 from the hyperthermophilic archaeon Geoglobus acetivorans.

Authors:  Tatiana E Petrova; Konstantin M Boyko; Alena Yu Nikolaeva; Tatiana N Stekhanova; Eugeny V Gruzdev; Andrey V Mardanov; Viktor S Stroilov; Jennifer A Littlechild; Vladimir O Popov; Ekaterina Yu Bezsudnova
Journal:  Extremophiles       Date:  2018-07-30       Impact factor: 2.395

Review 5.  Bringing Bioactive Compounds into Membranes: The UbiA Superfamily of Intramembrane Aromatic Prenyltransferases.

Authors:  Weikai Li
Journal:  Trends Biochem Sci       Date:  2016-02-24       Impact factor: 13.807

Review 6.  Archaea and the origin of eukaryotes.

Authors:  Laura Eme; Anja Spang; Jonathan Lombard; Courtney W Stairs; Thijs J G Ettema
Journal:  Nat Rev Microbiol       Date:  2017-11-10       Impact factor: 60.633

Review 7.  Lipid sugar carriers at the extremes: The phosphodolichols Archaea use in N-glycosylation.

Authors:  Jerry Eichler; Ziqiang Guan
Journal:  Biochim Biophys Acta Mol Cell Biol Lipids       Date:  2017-03-19       Impact factor: 4.698

8.  Sulfolobus Spindle-Shaped Virus 1 Contains Glycosylated Capsid Proteins, a Cellular Chromatin Protein, and Host-Derived Lipids.

Authors:  Emmanuelle R J Quemin; Maija K Pietilä; Hanna M Oksanen; Patrick Forterre; W Irene C Rijpstra; Stefan Schouten; Dennis H Bamford; David Prangishvili; Mart Krupovic
Journal:  J Virol       Date:  2015-09-09       Impact factor: 5.103

9.  GDGT cyclization proteins identify the dominant archaeal sources of tetraether lipids in the ocean.

Authors:  Zhirui Zeng; Xiao-Lei Liu; Kristen R Farley; Jeremy H Wei; William W Metcalf; Roger E Summons; Paula V Welander
Journal:  Proc Natl Acad Sci U S A       Date:  2019-10-07       Impact factor: 11.205

10.  New mode of energy metabolism in the seventh order of methanogens as revealed by comparative genome analysis of “Candidatus methanoplasma termitum”.

Authors:  Kristina Lang; Jörg Schuldes; Andreas Klingl; Anja Poehlein; Rolf Daniel; Andreas Brunea
Journal:  Appl Environ Microbiol       Date:  2015-02       Impact factor: 4.792

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