| Literature DB >> 31551956 |
Ziyi Liu1,2, Xia Xiao1,2,3, Yan Li1,2, Yuan Liu1,2,3, Ruichao Li1,2,3, Zhiqiang Wang1,2,3,4.
Abstract
Twelve carbapenem-resistant Escherichia coli strains were obtained from goose farms in Jiangsu, China. These isolates were resistant to multiple antimicrobials, and positive for the bla NDM- 5. The carbapenem-resistance of all strains mediated by bla NDM- 5 were successfully conjugated to E. coli J53. S1-PFGE and WGS results showed bla NDM- 5 was located on IncX3 conjugative plasmids with a size of ca. 46 kb. All bla NDM- 5-bearing IncX3 plasmids shared the same genetic context almost identical to pNDM_MGR194-bla NDM- 5 and pNDM-QD28-bla NDM- 5 reported in India and China, respectively. The twelve strains belonged to three STs, in which the dominant type of E. coli isolated from breeding goose farm carrying bla NDM- 5 was ST48. The emergence of bla NDM- 5-bearing strains in goose farms and the clonal transmission of E. coli within the breeding goose farm highlighted the potential reservoir of carbapenemase genes in waterfowl farming system, which may further contaminate environments and pose a threat to public health. Comprehensive surveillance of carbapenem-resistant bacteria in goose farms warrants further study to evaluate the underlying risks.Entities:
Keywords: E. coli; blaNDM–5; carbapenemase genes; long-read sequencing; plasmids
Year: 2019 PMID: 31551956 PMCID: PMC6737504 DOI: 10.3389/fmicb.2019.02002
Source DB: PubMed Journal: Front Microbiol ISSN: 1664-302X Impact factor: 5.640
Antibiotic susceptibility profiles of the carbapenem-resistant E. coli strains and the corresponding transconjugants to different antibiotics (mg/L).
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| L33 | 128 | 128 | 256 | >64 | >128 | >64 | 32 | 16 | 1 |
| L37 | 128 | 64 | 32 | >64 | >128 | >64 | 16 | 16 | 1 |
| L41-1 | 128 | 16 | 4 | >64 | >128 | >64 | 32 | ≤0.125 | 1 |
| L43-1 | 256 | 32 | 8 | >64 | >128 | >64 | 32 | 0.25 | 1 |
| L53 | 128 | 128 | 256 | >64 | >128 | >64 | 32 | 4 | 1 |
| L56 | 128 | >128 | >256 | >64 | >128 | >64 | 16 | 8 | 1 |
| L65 | 128 | 1 | ≤ 0.5 | >64 | >128 | >64 | 32 | 1 | 1 |
| L99 | 128 | >128 | >256 | >64 | >128 | >64 | 32 | 4 | 1 |
| L100 | 128 | 64 | 32 | >64 | >128 | >64 | 32 | ≤0.125 | 0.5 |
| L102 | 128 | 32 | 8 | >64 | 128 | 4 | 16 | ≤0.125 | 1 |
| L103-1 | 64 | 128 | >256 | >64 | >128 | >64 | 16 | 8 | 0.125 |
| L103-2 | 128 | 64 | 256 | >64 | >128 | >64 | 16 | ≤0.125 | 1 |
| L33T | 128 | 1 | ≤0.5 | >64 | 128 | 8 | 4 | ≤0.125 | 0.5 |
| L37T | 32 | 1 | ≤0.5 | >64 | 128 | 8 | 4 | ≤0.125 | 0.5 |
| L41-1T | 64 | 0.5 | 2 | >64 | >128 | 4 | 8 | ≤0.125 | 0.5 |
| L43-1T | 64 | 1 | 1 | >64 | >128 | 8 | 8 | ≤0.125 | 0.25 |
| L53T | 128 | 1 | 64 | >64 | 128 | 8 | 4 | ≤0.125 | 1 |
| L56T | 64 | 1 | ≤0.5 | >64 | 128 | 4 | 4 | ≤0.125 | 0.5 |
| L65T | 64 | 1 | ≤0.5 | >64 | 128 | 4 | 2 | ≤ 0.25 | 0.5 |
| L99T | 64 | 2 | ≤ 0.5 | >64 | 64 | 4 | 2 | ≤ 0.125 | 1 |
| L100T | 64 | 1 | 2 | >64 | 128 | 4 | 2 | ≤0.125 | 1 |
| L102T | 128 | 1 | 1 | >64 | >128 | 4 | 4 | ≤ 0.125 | 0.5 |
| L103-1T | 128 | 1 | ≤ 0.5 | >64 | 128 | 8 | 4 | ≤ 0.125 | 1 |
| L103-2T | 64 | 1 | 64 | >64 | 128 | 4 | 8 | ≤0.125 | 1 |
| J53b | ≤0.25 | 1 | ≤0.5 | 1 | ≤0.25 | 4 | 4 | ≤0.125 | 0.5 |
| ATCC25922c | ≤0.25 | 0.5 | ≤0.5 | 1 | ≤0.25 | 2 | 0.5 | ≤0.125 | 0.5 |
Basic information of the twelve blaNDM–5 positive E. coli strains revealed by WGS data.
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| L37 |
| ST-48 | Anal swab | + | + | pL37-2 (IncFIB, p0111) | 145704 | 9 | CP034590 | |
| pL37-3 (IncX3)d | 45650 | 1 | CP034591 | |||||||
| pL37-4 (IncFII) | 76559 | 3 | CP034592 | |||||||
| L41-1 |
| ST-48 | Feed | + | + | pL41-1-2 (IncFIB, IncHIB, p0111) | 201021 | 8 | CP034728 | |
| pL41-1-3 (IncFIB) | 111458 | 1 | CP034729 | |||||||
| pL41-1-4 (IncX3)d | 46238 | 1 | CP034730 | |||||||
| L53 |
| ST-48 | Water | + | + | pL53-2 (IncFIB, p0111) | 137848 | 9 | CP034745 | |
| pL53-3 (IncFII) | 76642 | 3 | CP034756 | |||||||
| pL53-4 (IncX3)d | 46259 | 1 | CP034757 | |||||||
| L65 |
| ST-3076 | Feces | + | + | pL65-2 (IncFIB, IncFII) | 145346 | 6 | CP034739 | |
| pL65-9 (IncX3)d | 46161 | 1 | CP034744 | |||||||
| L100 |
| ST-48 | Anal swab | + | + | pL100-2 (IncFIB, IncHIB, p0111) | 202387 | 8 | CP034746 | |
| pL100-3 (IncFIB) | 111458 | 1 | CP034747 | |||||||
| pL100-4 (IncX3)d | 46261 | 1 | CP034748 | |||||||
| L103-2 |
| ST8809 | Anal swab | + | + | pL103-2-2 (IncFIB) | 110210 | 0 | CP034844 | |
| pL103-2-3 (IncFIB) | 102295 | 1 | CP034845 | |||||||
| pL103-2-4 (IncFII) | 100667 | 6 | CP034846 | |||||||
| pL103-2-5 (IncX3)d | 46163 | 1 | CP034847 | |||||||
| pL103-2-6 (IncX1) | 13362 | 1 | CP034848 | |||||||
| pL103-2-7 (unknown) | 12606 | 6 | CP034849 | |||||||
| L33 |
| ST-48 | Anal swab | + | – | IncX3d, p0111 | 46kbc | 12 | Onlineb | |
| L43-1 |
| ST-48 | Feces | + | – | IncX3d, p0111, colRNAI | 46kb | 8 | Online | |
| L56 |
| ST-48 | Water | + | – | IncX3d, p0111 | 46kb | 12 | Online | |
| L99 |
| ST-48 | Anal swab | + | – | IncX3d, p0111 | 46kb | 12 | Online | |
| L102 |
| ST-48 | Anal swab | + | – | IncX3d, p0111 | 46kb | 6 | Online | |
| L103-1 |
| ST-48 | Anal swab | + | – | IncX3d, p0111, colRNAI | 46kb | 12 | Online |
FIGURE 1Sequence alignment analysis of IncX3 blaNDM–5 plasmids. (A) Linear alignment of four blaNDM–5-bearing E. coli strains. pNDM-QD28 (GenBank accession no. KU167608.1) and pNDM_MGR194-blaNDM–5 (GenBank accession KF220657.1) were the reported blaNDM–5-bearing plasmids. Plasmids pL41-1-4, pL53-4, pL65-9 and pL103-2-5 shown identical structure with pL100-4. (B) Circular comparison between the blaNDM–5-bearing IncX3 plasmid pL37-3 and the assembled contigs of other six blaNDM–5 positive strains without MinION data and based on Illumina data.