Literature DB >> 33859379

A guide to interrogating immunometabolism.

Kelsey Voss1, Hanna S Hong2,3, Jackie E Bader1, Ayaka Sugiura1, Costas A Lyssiotis2,3,4, Jeffrey C Rathmell5.   

Abstract

The metabolic charts memorized in early biochemistry courses, and then later forgotten, have come back to haunt many immunologists with new recognition of the importance of these pathways. Metabolites and the activity of metabolic pathways drive energy production, macromolecule synthesis, intracellular signalling, post-translational modifications and cell survival. Immunologists who identify a metabolic phenotype in their system are often left wondering where to begin and what does it mean? Here, we provide a framework for navigating and selecting the appropriate biochemical techniques to explore immunometabolism. We offer recommendations for initial approaches to develop and test metabolic hypotheses and how to avoid common mistakes. We then discuss how to take things to the next level with metabolomic approaches, such as isotope tracing and genetic approaches. By proposing strategies and evaluating the strengths and weaknesses of different methodologies, we aim to provide insight, note important considerations and discuss ways to avoid common misconceptions. Furthermore, we highlight recent studies demonstrating the power of these metabolic approaches to uncover the role of metabolism in immunology. By following the framework in this Review, neophytes and seasoned investigators alike can venture into the emerging realm of cellular metabolism and immunity with confidence and rigour.
© 2021. Springer Nature Limited.

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Year:  2021        PMID: 33859379      PMCID: PMC8478710          DOI: 10.1038/s41577-021-00529-8

Source DB:  PubMed          Journal:  Nat Rev Immunol        ISSN: 1474-1733            Impact factor:   108.555


  134 in total

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Journal:  Cell Signal       Date:  2010-08-19       Impact factor: 4.315

Review 2.  Advances in measuring cellular bioenergetics using extracellular flux.

Authors:  David A Ferrick; Andy Neilson; Craig Beeson
Journal:  Drug Discov Today       Date:  2008-02-13       Impact factor: 7.851

3.  Anaplerotic metabolism of alloreactive T cells provides a metabolic approach to treat graft-versus-host disease.

Authors:  Gary D Glick; Rodrigue Rossignol; Costas A Lyssiotis; Daniel Wahl; Charles Lesch; Brian Sanchez; Xikui Liu; Ling-Yang Hao; Clarke Taylor; Alexander Hurd; James L M Ferrara; Victor Tkachev; Craig A Byersdorfer; Laszlo Boros; Anthony W Opipari
Journal:  J Pharmacol Exp Ther       Date:  2014-08-14       Impact factor: 4.030

Review 4.  Cytokine-like Roles for Metabolites in Immunity.

Authors:  Zbigniew Zasłona; Luke A J O'Neill
Journal:  Mol Cell       Date:  2020-04-24       Impact factor: 17.970

5.  The contributions of respiration and glycolysis to extracellular acid production.

Authors:  Shona A Mookerjee; Renata L S Goncalves; Akos A Gerencser; David G Nicholls; Martin D Brand
Journal:  Biochim Biophys Acta       Date:  2014-10-27

6.  Using Seahorse Machine to Measure OCR and ECAR in Cancer Cells.

Authors:  Jing Zhang; Qing Zhang
Journal:  Methods Mol Biol       Date:  2019

7.  Metabolic Competition in the Tumor Microenvironment Is a Driver of Cancer Progression.

Authors:  Chih-Hao Chang; Jing Qiu; David O'Sullivan; Michael D Buck; Takuro Noguchi; Jonathan D Curtis; Qiongyu Chen; Mariel Gindin; Matthew M Gubin; Gerritje J W van der Windt; Elena Tonc; Robert D Schreiber; Edward J Pearce; Erika L Pearce
Journal:  Cell       Date:  2015-08-27       Impact factor: 41.582

Review 8.  Acetyl-CoA and the regulation of metabolism: mechanisms and consequences.

Authors:  Lei Shi; Benjamin P Tu
Journal:  Curr Opin Cell Biol       Date:  2015-02-20       Impact factor: 8.382

9.  Improving the metabolic fidelity of cancer models with a physiological cell culture medium.

Authors:  Johan Vande Voorde; Tobias Ackermann; Nadja Pfetzer; David Sumpton; Gillian Mackay; Gabriela Kalna; Colin Nixon; Karen Blyth; Eyal Gottlieb; Saverio Tardito
Journal:  Sci Adv       Date:  2019-01-02       Impact factor: 14.136

10.  Parallel analysis of tri-molecular biosynthesis with cell identity and function in single cells.

Authors:  Samuel C Kimmey; Luciene Borges; Reema Baskar; Sean C Bendall
Journal:  Nat Commun       Date:  2019-03-12       Impact factor: 14.919

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  15 in total

1.  SDHA: a key player in T cell-mediated intestinal disease severity.

Authors:  José M Izquierdo
Journal:  Cell Mol Immunol       Date:  2022-01-07       Impact factor: 11.530

Review 2.  The metabolic nature of inflammatory bowel diseases.

Authors:  Timon E Adolph; Moritz Meyer; Julian Schwärzler; Lisa Mayr; Felix Grabherr; Herbert Tilg
Journal:  Nat Rev Gastroenterol Hepatol       Date:  2022-07-29       Impact factor: 73.082

3.  Metabolites: fuelling the immune response.

Authors:  Corrado Mauro; Moreira Diana; Jones Nicholas
Journal:  Clin Exp Immunol       Date:  2022-06-11       Impact factor: 5.732

Review 4.  Immunometabolism - The Role of Branched-Chain Amino Acids.

Authors:  Berkay Yahsi; Gurcan Gunaydin
Journal:  Front Immunol       Date:  2022-06-23       Impact factor: 8.786

5.  Case Report: Hemophagocytic Lymphocytosis in a Patient With Glutaric Aciduria Type IIC.

Authors:  Lingtong Huang; Wei Wu; Yijing Zhu; Huili Yu; Lingling Tang; Xueling Fang
Journal:  Front Immunol       Date:  2022-01-13       Impact factor: 7.561

Review 6.  Making a Killer: Selecting the Optimal Natural Killer Cells for Improved Immunotherapies.

Authors:  Samantha A Barnes; Isabella Trew; Emma de Jong; Bree Foley
Journal:  Front Immunol       Date:  2021-10-27       Impact factor: 7.561

7.  Apelin-13 Attenuates Lipopolysaccharide-Induced Inflammatory Responses and Acute Lung Injury by Regulating PFKFB3-Driven Glycolysis Induced by NOX4-Dependent ROS.

Authors:  Yafei Yuan; Wei Wang; Yue Zhang; Qiaohui Hong; Wenhui Huang; Lijuan Li; Zhanzhan Xie; Yixin Chen; Xu Li; Ying Meng
Journal:  J Inflamm Res       Date:  2022-03-30

Review 8.  Systems-based approaches to study immunometabolism.

Authors:  Vinee Purohit; Allon Wagner; Nir Yosef; Vijay K Kuchroo
Journal:  Cell Mol Immunol       Date:  2022-02-04       Impact factor: 22.096

9.  A high OXPHOS CD8 T cell subset is predictive of immunotherapy resistance in melanoma patients.

Authors:  Chuan Li; Yee Peng Phoon; Keaton Karlinsey; Ye F Tian; Samjhana Thapaliya; Angkana Thongkum; Lili Qu; Alyssa Joyce Matz; Mark Cameron; Cheryl Cameron; Antoine Menoret; Pauline Funchain; Jung-Min Song; C Marcela Diaz-Montero; Banumathi Tamilselvan; Jackelyn B Golden; Michael Cartwright; Annabelle Rodriguez; Christopher Bonin; Anthony Vella; Beiyan Zhou; Brian R Gastman
Journal:  J Exp Med       Date:  2021-11-22       Impact factor: 17.579

Review 10.  Metabolic Reprogramming of Immune Cells at the Maternal-Fetal Interface and the Development of Techniques for Immunometabolism.

Authors:  Yiqiu Wei; Jinli Ding; Jianan Li; Songchen Cai; Su Liu; Ling Hong; Tailang Yin; Yan Zhang; Lianghui Diao
Journal:  Front Immunol       Date:  2021-09-09       Impact factor: 7.561

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